Variant report

Variant	rs73356416
Chromosome Location	chr6:13530798-13530799
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13522682..13524760-chr6:13529345..13531013,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10452593	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11967747	1.00[EUR][1000 genomes]
rs2560766	1.00[EUR][1000 genomes]
rs28854810	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57091985	1.00[EUR][1000 genomes]
rs57461916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58064210	1.00[EUR][1000 genomes]
rs58327896	1.00[EUR][1000 genomes]
rs58379964	1.00[EUR][1000 genomes]
rs58519606	1.00[EUR][1000 genomes]
rs58887660	0.80[AFR][1000 genomes]
rs60136918	1.00[EUR][1000 genomes]
rs60607722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61376161	1.00[EUR][1000 genomes]
rs6458823	1.00[EUR][1000 genomes]
rs6910375	1.00[EUR][1000 genomes]
rs73356408	1.00[EUR][1000 genomes]
rs73356419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73356424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73356428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73356430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73356433	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73356438	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73356451	1.00[EUR][1000 genomes]
rs73356458	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73356463	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73366959	1.00[EUR][1000 genomes]
rs73366967	1.00[EUR][1000 genomes]
rs73372840	1.00[EUR][1000 genomes]
rs73372862	1.00[EUR][1000 genomes]
rs73372865	1.00[EUR][1000 genomes]
rs73372868	1.00[EUR][1000 genomes]
rs73372873	1.00[EUR][1000 genomes]
rs73372879	1.00[EUR][1000 genomes]
rs73372889	1.00[EUR][1000 genomes]
rs9370103	1.00[EUR][1000 genomes]
rs9474318	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1033620	chr6:13419730-13571788	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13525200-13532400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:13525200-13534800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:13527600-13532400	Weak transcription	Right Atrium	heart
4	chr6:13527600-13533000	Weak transcription	GM12878-XiMat	blood
5	chr6:13527800-13534800	Weak transcription	Lung	lung
6	chr6:13528000-13532400	Weak transcription	Placenta	Placenta
7	chr6:13528200-13536000	Weak transcription	Right Ventricle	heart
8	chr6:13529400-13531600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr6:13529400-13534800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:13529600-13532200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:13529600-13532200	Weak transcription	Left Ventricle	heart
12	chr6:13529600-13535000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:13529600-13536600	Weak transcription	Spleen	Spleen
14	chr6:13529800-13531000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr6:13529800-13531000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr6:13529800-13531400	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr6:13529800-13531600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr6:13529800-13532200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr6:13529800-13536000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:13530000-13532200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr6:13530000-13532400	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr6:13530000-13534800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr6:13530000-13537200	Weak transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links