Variant report

Variant	rs73372873
Chromosome Location	chr6:13517195-13517196
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr6:13517157-13517901	MCF-7	breast:	n/a	n/a
2	GATA3	chr6:13517072-13517933	MCF-7	breast:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:13509236..13512148-chr6:13513623..13517377,3	K562	blood:
2	chr6:13509314..13512710-chr6:13515099..13518078,3	MCF-7	breast:
3	chr6:13515710..13517282-chr6:13519419..13521735,2	K562	blood:
4	chr6:13516073..13517719-chr6:13525004..13527132,2	MCF-7	breast:
5	chr6:13487441..13489121-chr6:13514406..13517468,3	MCF-7	breast:
6	chr6:13515852..13517581-chr6:13613414..13615781,2	K562	blood:

No data

Variant related genes	Relation type
RPS4XP7	TF binding region
ENSG00000261071	Chromatin interaction
ENSG00000218265	Chromatin interaction
ENSG00000225921	Chromatin interaction
ENSG00000145990	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10452593	1.00[EUR][1000 genomes]
rs11967747	1.00[EUR][1000 genomes]
rs12193241	1.00[AMR][1000 genomes]
rs2560766	1.00[EUR][1000 genomes]
rs28854810	1.00[EUR][1000 genomes]
rs57091985	1.00[EUR][1000 genomes]
rs57461916	1.00[EUR][1000 genomes]
rs57591512	1.00[AMR][1000 genomes]
rs58064210	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58327896	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58379964	1.00[EUR][1000 genomes]
rs58519606	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58726900	1.00[EUR][1000 genomes]
rs60136918	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60607722	1.00[EUR][1000 genomes]
rs61376161	1.00[EUR][1000 genomes]
rs6458823	1.00[EUR][1000 genomes]
rs6910375	1.00[EUR][1000 genomes]
rs73356408	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73356416	1.00[EUR][1000 genomes]
rs73356419	1.00[EUR][1000 genomes]
rs73356424	1.00[EUR][1000 genomes]
rs73356428	1.00[EUR][1000 genomes]
rs73356430	1.00[EUR][1000 genomes]
rs73356433	1.00[EUR][1000 genomes]
rs73356438	1.00[EUR][1000 genomes]
rs73356451	1.00[EUR][1000 genomes]
rs73356458	1.00[EUR][1000 genomes]
rs73356463	1.00[EUR][1000 genomes]
rs73366959	1.00[EUR][1000 genomes]
rs73366967	1.00[EUR][1000 genomes]
rs73372840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73372862	1.00[EUR][1000 genomes]
rs73372865	1.00[EUR][1000 genomes]
rs73372868	1.00[EUR][1000 genomes]
rs73372879	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73372889	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9370103	1.00[EUR][1000 genomes]
rs9474318	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1033620	chr6:13419730-13571788	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv462640	chr6:13426539-13519434	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv600994	chr6:13426539-13519434	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv470802	chr6:13441424-13519371	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13513000-13527200	Weak transcription	Right Atrium	heart
2	chr6:13514400-13524400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:13516400-13517200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:13516800-13517800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:13517000-13517800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:13517000-13517800	Enhancers	HUVEC	blood vessel
7	chr6:13517000-13518000	Enhancers	NHEK	skin

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