Variant report

Variant	rs58064210
Chromosome Location	chr6:13523910-13523911
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13523078..13528567-chr6:13572959..13576229,4	MCF-7	breast:
2	chr6:13522682..13524760-chr6:13529345..13531013,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124523	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10452593	1.00[EUR][1000 genomes]
rs11967747	1.00[EUR][1000 genomes]
rs2560766	1.00[EUR][1000 genomes]
rs28854810	1.00[EUR][1000 genomes]
rs57091985	1.00[EUR][1000 genomes]
rs57461916	1.00[EUR][1000 genomes]
rs58327896	1.00[EUR][1000 genomes]
rs58379964	1.00[EUR][1000 genomes]
rs58519606	1.00[EUR][1000 genomes]
rs60136918	1.00[EUR][1000 genomes]
rs60607722	1.00[EUR][1000 genomes]
rs61376161	1.00[EUR][1000 genomes]
rs6458823	1.00[EUR][1000 genomes]
rs6910375	1.00[EUR][1000 genomes]
rs73356408	1.00[EUR][1000 genomes]
rs73356416	1.00[EUR][1000 genomes]
rs73356419	1.00[EUR][1000 genomes]
rs73356424	1.00[EUR][1000 genomes]
rs73356428	1.00[EUR][1000 genomes]
rs73356430	1.00[EUR][1000 genomes]
rs73356433	1.00[EUR][1000 genomes]
rs73356438	1.00[EUR][1000 genomes]
rs73356451	1.00[EUR][1000 genomes]
rs73356458	1.00[EUR][1000 genomes]
rs73356463	1.00[EUR][1000 genomes]
rs73366959	1.00[EUR][1000 genomes]
rs73366967	1.00[EUR][1000 genomes]
rs73372840	1.00[EUR][1000 genomes]
rs73372862	1.00[EUR][1000 genomes]
rs73372865	1.00[EUR][1000 genomes]
rs73372868	1.00[EUR][1000 genomes]
rs73372873	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73372879	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73372889	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9370103	1.00[EUR][1000 genomes]
rs9474318	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1033620	chr6:13419730-13571788	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13513000-13527200	Weak transcription	Right Atrium	heart
2	chr6:13514400-13524400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:13517200-13524000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:13517800-13524000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:13521600-13529200	Enhancers	HUVEC	blood vessel
6	chr6:13522200-13524000	Weak transcription	Spleen	Spleen
7	chr6:13522200-13524400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr6:13522800-13525000	Weak transcription	Fetal Brain Male	brain
9	chr6:13522800-13527200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:13523000-13530000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:13523200-13524000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr6:13523400-13524200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:13523400-13524600	Weak transcription	Fetal Brain Female	brain
14	chr6:13523400-13525400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr6:13523400-13526800	Weak transcription	NHEK	skin
16	chr6:13523400-13527200	Weak transcription	Osteobl	bone
17	chr6:13523400-13527400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:13523600-13525600	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr6:13523600-13526800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr6:13523800-13524000	Enhancers	Lung	lung
21	chr6:13523800-13524000	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr6:13523800-13524000	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr6:13523800-13526200	Enhancers	Colonic Mucosa	Colon
24	chr6:13523800-13527800	Enhancers	Fetal Thymus	thymus

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