Variant report

Variant	rs60607722
Chromosome Location	chr6:13539454-13539455
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13538059..13539888-chr6:13573447..13574992,2	MCF-7	breast:
2	chr6:13330694..13332569-chr6:13538458..13540765,2	K562	blood:
3	chr6:13486789..13489156-chr6:13538983..13542813,3	MCF-7	breast:
4	chr6:13537499..13539859-chr6:13613590..13616143,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261071	Chromatin interaction
ENSG00000124523	Chromatin interaction
ENSG00000145990	Chromatin interaction
ENSG00000225921	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10452593	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11967747	1.00[EUR][1000 genomes]
rs2560766	1.00[EUR][1000 genomes]
rs28854810	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57091985	1.00[EUR][1000 genomes]
rs57461916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58064210	1.00[EUR][1000 genomes]
rs58327896	1.00[EUR][1000 genomes]
rs58379964	1.00[EUR][1000 genomes]
rs58519606	1.00[EUR][1000 genomes]
rs58887660	0.80[AFR][1000 genomes]
rs60136918	1.00[EUR][1000 genomes]
rs61376161	1.00[EUR][1000 genomes]
rs6458823	1.00[EUR][1000 genomes]
rs6910375	1.00[EUR][1000 genomes]
rs73356408	1.00[EUR][1000 genomes]
rs73356416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73356419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73356424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73356428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73356430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73356433	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73356438	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73356451	1.00[EUR][1000 genomes]
rs73356458	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73356463	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73366959	1.00[EUR][1000 genomes]
rs73366967	1.00[EUR][1000 genomes]
rs73372840	1.00[EUR][1000 genomes]
rs73372862	1.00[EUR][1000 genomes]
rs73372865	1.00[EUR][1000 genomes]
rs73372868	1.00[EUR][1000 genomes]
rs73372873	1.00[EUR][1000 genomes]
rs73372879	1.00[EUR][1000 genomes]
rs73372889	1.00[EUR][1000 genomes]
rs9370103	1.00[EUR][1000 genomes]
rs9474318	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1033620	chr6:13419730-13571788	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13536400-13543600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:13536800-13541600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:13538000-13544800	Weak transcription	Liver	Liver
4	chr6:13538600-13540400	Enhancers	Primary B cells from peripheral blood	blood
5	chr6:13539200-13539600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:13539400-13540000	Enhancers	Primary B cells from cord blood	blood
7	chr6:13539400-13545800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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