Variant report

Variant	rs73372840
Chromosome Location	chr6:13511868-13511869
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13509314..13512710-chr6:13515099..13518078,3	MCF-7	breast:
2	chr6:13508787..13510378-chr6:13511004..13513571,2	K562	blood:
3	chr6:13355838..13357537-chr6:13511461..13514141,2	K562	blood:
4	chr6:13509236..13512148-chr6:13513623..13517377,3	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10452593	1.00[EUR][1000 genomes]
rs11967747	1.00[EUR][1000 genomes]
rs12193241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2560766	1.00[EUR][1000 genomes]
rs28854810	1.00[EUR][1000 genomes]
rs57091985	1.00[EUR][1000 genomes]
rs57461916	1.00[EUR][1000 genomes]
rs57591512	1.00[AMR][1000 genomes]
rs58064210	1.00[EUR][1000 genomes]
rs58327896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58379964	1.00[EUR][1000 genomes]
rs58519606	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58726900	1.00[EUR][1000 genomes]
rs60136918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60607722	1.00[EUR][1000 genomes]
rs61376161	1.00[EUR][1000 genomes]
rs6458823	1.00[EUR][1000 genomes]
rs6910375	1.00[EUR][1000 genomes]
rs73356408	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73356416	1.00[EUR][1000 genomes]
rs73356419	1.00[EUR][1000 genomes]
rs73356424	1.00[EUR][1000 genomes]
rs73356428	1.00[EUR][1000 genomes]
rs73356430	1.00[EUR][1000 genomes]
rs73356433	1.00[EUR][1000 genomes]
rs73356438	1.00[EUR][1000 genomes]
rs73356451	1.00[EUR][1000 genomes]
rs73356458	1.00[EUR][1000 genomes]
rs73356463	1.00[EUR][1000 genomes]
rs73366959	1.00[EUR][1000 genomes]
rs73366967	1.00[EUR][1000 genomes]
rs73372862	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73372865	1.00[EUR][1000 genomes]
rs73372868	1.00[EUR][1000 genomes]
rs73372873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73372879	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73372889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9370103	1.00[EUR][1000 genomes]
rs9474318	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1033620	chr6:13419730-13571788	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv462640	chr6:13426539-13519434	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv600994	chr6:13426539-13519434	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv470802	chr6:13441424-13519371	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13500200-13512600	Weak transcription	Small Intestine	intestine
2	chr6:13506200-13512400	Weak transcription	Right Atrium	heart
3	chr6:13507200-13512400	Weak transcription	Left Ventricle	heart
4	chr6:13510000-13513600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:13510200-13512000	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr6:13510200-13513600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:13510400-13512000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:13510600-13512000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:13510600-13512000	Weak transcription	NHLF	lung
10	chr6:13511200-13512000	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr6:13511200-13512400	Enhancers	Rectal Mucosa Donor 29	rectum
12	chr6:13511200-13512800	Enhancers	Right Ventricle	heart
13	chr6:13511200-13512800	Enhancers	Spleen	Spleen
14	chr6:13511400-13512000	Enhancers	Lung	lung
15	chr6:13511400-13512400	Enhancers	Colonic Mucosa	Colon
16	chr6:13511400-13513000	Enhancers	Adipose Nuclei	Adipose
17	chr6:13511600-13512400	Enhancers	Fetal Lung	lung
18	chr6:13511600-13512800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
19	chr6:13511600-13512800	Enhancers	Fetal Muscle Leg	muscle
20	chr6:13511600-13513000	Enhancers	Fetal Muscle Trunk	muscle
21	chr6:13511800-13512200	Weak transcription	HepG2	liver
22	chr6:13511800-13512400	Enhancers	Duodenum Mucosa	Duodenum
23	chr6:13511800-13512600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:13511800-13512600	Enhancers	Liver	Liver
25	chr6:13511800-13512600	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr6:13511800-13512600	Enhancers	HUVEC	blood vessel
27	chr6:13511800-13512800	Enhancers	Fetal Heart	heart
28	chr6:13511800-13512800	Enhancers	Fetal Stomach	stomach

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