Variant report
| Variant | rs73356451 |
|---|---|
| Chromosome Location | chr6:13542813-13542814 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000145990 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10452593 | 1.00[EUR][1000 genomes] |
| rs11967747 | 1.00[EUR][1000 genomes] |
| rs2560766 | 1.00[EUR][1000 genomes] |
| rs28854810 | 1.00[EUR][1000 genomes] |
| rs57091985 | 1.00[EUR][1000 genomes] |
| rs57461916 | 1.00[EUR][1000 genomes] |
| rs58064210 | 1.00[EUR][1000 genomes] |
| rs58327896 | 1.00[EUR][1000 genomes] |
| rs58379964 | 1.00[EUR][1000 genomes] |
| rs58519606 | 1.00[EUR][1000 genomes] |
| rs60136918 | 1.00[EUR][1000 genomes] |
| rs60607722 | 1.00[EUR][1000 genomes] |
| rs61376161 | 1.00[EUR][1000 genomes] |
| rs6458823 | 1.00[EUR][1000 genomes] |
| rs6910375 | 1.00[EUR][1000 genomes] |
| rs73356408 | 1.00[EUR][1000 genomes] |
| rs73356416 | 1.00[EUR][1000 genomes] |
| rs73356419 | 1.00[EUR][1000 genomes] |
| rs73356424 | 1.00[EUR][1000 genomes] |
| rs73356428 | 1.00[EUR][1000 genomes] |
| rs73356430 | 1.00[EUR][1000 genomes] |
| rs73356433 | 1.00[EUR][1000 genomes] |
| rs73356438 | 1.00[EUR][1000 genomes] |
| rs73356458 | 1.00[EUR][1000 genomes] |
| rs73356463 | 1.00[EUR][1000 genomes] |
| rs73366959 | 1.00[EUR][1000 genomes] |
| rs73366967 | 1.00[EUR][1000 genomes] |
| rs73372840 | 1.00[EUR][1000 genomes] |
| rs73372862 | 1.00[EUR][1000 genomes] |
| rs73372865 | 1.00[EUR][1000 genomes] |
| rs73372868 | 1.00[EUR][1000 genomes] |
| rs73372873 | 1.00[EUR][1000 genomes] |
| rs73372879 | 1.00[EUR][1000 genomes] |
| rs73372889 | 1.00[EUR][1000 genomes] |
| rs9370103 | 1.00[EUR][1000 genomes] |
| rs9474318 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532021 | chr6:13232627-13805381 | Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 74 gene(s) | inside rSNPs | diseases |
| 2 | nsv1033620 | chr6:13419730-13571788 | Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:13536400-13543600 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 2 | chr6:13538000-13544800 | Weak transcription | Liver | Liver |
| 3 | chr6:13539400-13545800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
