Variant report

Variant	rs58887858
Chromosome Location	chr6:145039395-145039396
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs55994018	1.00[EUR][1000 genomes]
rs57539304	1.00[EUR][1000 genomes]
rs57946365	1.00[EUR][1000 genomes]
rs58299443	1.00[EUR][1000 genomes]
rs59989498	1.00[EUR][1000 genomes]
rs6915534	1.00[EUR][1000 genomes]
rs73591939	1.00[EUR][1000 genomes]
rs73591971	1.00[EUR][1000 genomes]
rs73594582	1.00[EUR][1000 genomes]
rs73594595	1.00[EUR][1000 genomes]
rs73595585	1.00[EUR][1000 genomes]
rs73596513	1.00[EUR][1000 genomes]
rs73599519	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1032838	chr6:144978504-145110121	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1021098	chr6:145017386-145106441	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144996600-145052400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:145004400-145047000	Weak transcription	HSMMtube	muscle
3	chr6:145009000-145047000	Weak transcription	Esophagus	oesophagus
4	chr6:145010600-145047000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:145011000-145052600	Weak transcription	Ovary	ovary
6	chr6:145011800-145065600	Weak transcription	Pancreas	Pancrea
7	chr6:145011800-145090200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:145011800-145096600	Weak transcription	Thymus	Thymus
9	chr6:145012000-145047000	Weak transcription	Gastric	stomach
10	chr6:145012000-145055600	Weak transcription	Spleen	Spleen
11	chr6:145012400-145053000	Weak transcription	Fetal Stomach	stomach
12	chr6:145014200-145047000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:145018200-145047200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr6:145018200-145052400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr6:145018400-145069000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:145018800-145041200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr6:145019000-145047000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr6:145019400-145052600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr6:145020800-145039400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:145022000-145041000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr6:145022000-145051400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr6:145022200-145053000	Weak transcription	Fetal Intestine Small	intestine
23	chr6:145024000-145087200	Weak transcription	Psoas Muscle	Psoas
24	chr6:145024200-145047000	Weak transcription	Fetal Thymus	thymus
25	chr6:145024600-145051400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr6:145025000-145047200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr6:145025000-145050200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:145026800-145039800	Weak transcription	Left Ventricle	heart
29	chr6:145027400-145052400	Weak transcription	Liver	Liver
30	chr6:145030000-145041400	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr6:145030000-145047000	Weak transcription	Lung	lung
32	chr6:145030000-145047000	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr6:145030200-145039600	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr6:145030200-145039600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr6:145030200-145051000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:145030200-145052400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr6:145030200-145052600	Weak transcription	Aorta	Aorta
38	chr6:145030200-145052600	Weak transcription	Fetal Intestine Large	intestine
39	chr6:145031600-145039400	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr6:145031600-145050600	Weak transcription	Primary hematopoietic stem cells	blood
41	chr6:145032400-145047000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr6:145033800-145039400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:145033800-145046600	Weak transcription	Fetal Heart	heart
44	chr6:145034000-145039400	Weak transcription	HepG2	liver
45	chr6:145034200-145039400	Weak transcription	HMEC	breast
46	chr6:145034200-145043600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr6:145035800-145052600	Weak transcription	Fetal Lung	lung
48	chr6:145036000-145039400	Weak transcription	Primary B cells from cord blood	blood
49	chr6:145036000-145041200	Weak transcription	Dnd41	blood
50	chr6:145036200-145040200	Weak transcription	Primary B cells from peripheral blood	blood

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