Variant report

Variant	rs73594582
Chromosome Location	chr2:29918976-29918977
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs55994018	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57539304	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57946365	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58299443	1.00[EUR][1000 genomes]
rs58887858	1.00[EUR][1000 genomes]
rs59427278	1.00[AFR][1000 genomes]
rs59989498	1.00[EUR][1000 genomes]
rs6915534	1.00[EUR][1000 genomes]
rs6932560	1.00[EUR][1000 genomes]
rs73591939	1.00[EUR][1000 genomes]
rs73591971	1.00[EUR][1000 genomes]
rs73594595	1.00[EUR][1000 genomes]
rs73595585	1.00[EUR][1000 genomes]
rs73596399	0.81[AFR][1000 genomes]
rs73596402	0.81[AFR][1000 genomes]
rs73596513	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73596534	0.89[AFR][1000 genomes]
rs73596541	1.00[AFR][1000 genomes]
rs73596548	1.00[AFR][1000 genomes]
rs73599519	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534203	chr2:29801273-30164069	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv833636	chr2:29863990-30020754	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:29915400-29920000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr2:29916800-29926000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:29918000-29925800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:29918200-29920400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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