Variant report

Variant	rs73591939
Chromosome Location	chr6:145008760-145008761
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs17801051	1.00[ASN][1000 genomes]
rs4392731	1.00[ASN][1000 genomes]
rs4530873	1.00[ASN][1000 genomes]
rs55994018	1.00[EUR][1000 genomes]
rs56009684	1.00[ASN][1000 genomes]
rs57461230	1.00[ASN][1000 genomes]
rs57539304	1.00[EUR][1000 genomes]
rs57772972	1.00[ASN][1000 genomes]
rs57946365	1.00[EUR][1000 genomes]
rs58299443	1.00[EUR][1000 genomes]
rs58887858	1.00[EUR][1000 genomes]
rs59989498	1.00[EUR][1000 genomes]
rs61515235	1.00[ASN][1000 genomes]
rs62427183	1.00[ASN][1000 genomes]
rs62427191	1.00[ASN][1000 genomes]
rs62427192	1.00[ASN][1000 genomes]
rs62427193	1.00[ASN][1000 genomes]
rs6909505	1.00[ASN][1000 genomes]
rs6915534	1.00[EUR][1000 genomes]
rs73591971	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73594582	1.00[EUR][1000 genomes]
rs73594595	1.00[EUR][1000 genomes]
rs73595585	1.00[EUR][1000 genomes]
rs73596513	1.00[EUR][1000 genomes]
rs73597504	1.00[ASN][1000 genomes]
rs73597515	1.00[ASN][1000 genomes]
rs73597587	1.00[ASN][1000 genomes]
rs73599510	1.00[ASN][1000 genomes]
rs73599519	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7776354	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1032838	chr6:144978504-145110121	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144981200-145031000	Weak transcription	Placenta	Placenta
2	chr6:144982800-145010000	Weak transcription	Fetal Stomach	stomach
3	chr6:144983000-145024600	Weak transcription	Fetal Kidney	kidney
4	chr6:144996000-145010000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:144996600-145018400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:144996600-145052400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr6:144996800-145009800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:144997000-145009400	Weak transcription	HMEC	breast
9	chr6:144997000-145010000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:144997000-145010000	Weak transcription	Fetal Intestine Small	intestine
11	chr6:144997000-145010000	Weak transcription	Spleen	Spleen
12	chr6:144997000-145010200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:144997000-145010200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:144997000-145010600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:144997000-145010600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr6:144997000-145011000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:144997000-145011400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr6:144997000-145011800	Weak transcription	Colonic Mucosa	Colon
19	chr6:144997000-145017600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:144997200-145018000	Weak transcription	NHLF	lung
21	chr6:144999400-145013200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr6:144999400-145025400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:144999800-145010200	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr6:145000800-145025400	Weak transcription	HSMM	muscle
25	chr6:145002400-145010800	Weak transcription	Right Atrium	heart
26	chr6:145002400-145013200	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr6:145002800-145009800	Weak transcription	Aorta	Aorta
28	chr6:145002800-145018000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr6:145004400-145047000	Weak transcription	HSMMtube	muscle
30	chr6:145004600-145010000	Weak transcription	Ovary	ovary
31	chr6:145004600-145010200	Weak transcription	Gastric	stomach
32	chr6:145004600-145010400	Weak transcription	Lung	lung
33	chr6:145004600-145010400	Weak transcription	Thymus	Thymus
34	chr6:145004600-145010600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr6:145005000-145009800	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr6:145005000-145010000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr6:145005000-145010000	Weak transcription	Pancreas	Pancrea
38	chr6:145005000-145010200	Weak transcription	Left Ventricle	heart
39	chr6:145005000-145010400	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr6:145005000-145017800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr6:145005000-145031000	Weak transcription	HUVEC	blood vessel
42	chr6:145005200-145008800	Weak transcription	Fetal Muscle Trunk	muscle
43	chr6:145005200-145010600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr6:145005200-145010600	Weak transcription	Fetal Thymus	thymus
45	chr6:145005800-145009200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
46	chr6:145005800-145010200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr6:145005800-145010200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr6:145005800-145010200	Weak transcription	HepG2	liver
49	chr6:145005800-145017400	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr6:145006200-145009000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood

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