Variant report

Variant	rs62427191
Chromosome Location	chr6:144994793-144994794
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17801051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4392731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4530873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56009684	1.00[ASN][1000 genomes]
rs57461230	1.00[ASN][1000 genomes]
rs57772972	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61515235	1.00[ASN][1000 genomes]
rs62427183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62427192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62427193	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6909505	1.00[ASN][1000 genomes]
rs73591939	1.00[ASN][1000 genomes]
rs73591971	1.00[ASN][1000 genomes]
rs73597504	1.00[ASN][1000 genomes]
rs73597515	1.00[ASN][1000 genomes]
rs73597587	1.00[ASN][1000 genomes]
rs73599510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73599519	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7776354	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv604822	chr6:144968195-145001887	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1032838	chr6:144978504-145110121	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144981200-144996400	Weak transcription	Pancreas	Pancrea
2	chr6:144981200-145031000	Weak transcription	Placenta	Placenta
3	chr6:144982000-144996200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:144982600-144996200	Weak transcription	HSMM	muscle
5	chr6:144982800-145010000	Weak transcription	Fetal Stomach	stomach
6	chr6:144983000-145024600	Weak transcription	Fetal Kidney	kidney
7	chr6:144984800-144996200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:144985000-145004200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:144986200-145002000	Weak transcription	Small Intestine	intestine
10	chr6:144988600-144995800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:144990200-144995600	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr6:144991000-144996200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:144992600-144994800	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr6:144993000-144996200	Weak transcription	Osteobl	bone
15	chr6:144993000-145000800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr6:144994000-144995600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:144994400-144994800	Weak transcription	HSMMtube	muscle
18	chr6:144994600-144995400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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