Variant report

Variant	rs6909505
Chromosome Location	chr6:144966808-144966809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144966548..144968116-chr6:144970160..144972090,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17801051	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4392731	1.00[ASN][1000 genomes]
rs4530873	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs56009684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57461230	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57772972	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61515235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62427183	1.00[ASN][1000 genomes]
rs62427191	1.00[ASN][1000 genomes]
rs62427192	1.00[ASN][1000 genomes]
rs62427193	1.00[ASN][1000 genomes]
rs6914603	1.00[CEU][hapmap]
rs73591939	1.00[ASN][1000 genomes]
rs73591971	1.00[ASN][1000 genomes]
rs73597504	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73597515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73597587	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73599510	1.00[ASN][1000 genomes]
rs73599519	1.00[ASN][1000 genomes]
rs7776354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv2763600	chr6:144965887-144970275	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6909505	FCER2	trans	lymphoblastoid	seeQTL
rs6909505	GPR171	trans	lymphoblastoid	seeQTL

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144930600-144973000	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr6:144947000-144969200	Weak transcription	Fetal Kidney	kidney
3	chr6:144948400-144973600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr6:144949200-144980200	Weak transcription	Fetal Thymus	thymus
5	chr6:144950200-144973600	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr6:144951000-144974800	Weak transcription	Primary B cells from cord blood	blood
7	chr6:144951200-144974800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:144951600-144975000	Weak transcription	Primary T cells from cord blood	blood
9	chr6:144951800-144977600	Weak transcription	Dnd41	blood
10	chr6:144952600-144974600	Weak transcription	Primary B cells from peripheral blood	blood
11	chr6:144959600-144969200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:144959600-144974800	Weak transcription	Stomach Mucosa	stomach
13	chr6:144961200-144969000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr6:144961200-144970600	Weak transcription	Psoas Muscle	Psoas
15	chr6:144961400-144969400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr6:144961400-144978600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr6:144962800-144973200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr6:144962800-144975000	Weak transcription	Fetal Lung	lung
19	chr6:144962800-144980200	Weak transcription	Ovary	ovary
20	chr6:144963000-144973200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr6:144964400-144970800	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr6:144964800-144967400	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr6:144964800-144970800	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr6:144965000-144968800	Enhancers	HepG2	liver
25	chr6:144965000-144970600	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr6:144965000-144970600	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr6:144965000-144970600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:144965200-144967800	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr6:144965400-144974200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr6:144965600-144982400	Weak transcription	HSMM	muscle
31	chr6:144965800-144967000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr6:144965800-144970200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:144966000-144968200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:144966200-144969200	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr6:144966200-144970200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr6:144966400-144967400	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr6:144966600-144967000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr6:144966600-144967200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr6:144966600-144967400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
40	chr6:144966800-144967000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:144966800-144967800	Enhancers	H1 Cell Line	embryonic stem cell
42	chr6:144966800-144968000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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