Variant report

Variant	rs56009684
Chromosome Location	chr6:144961088-144961089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17801051	1.00[ASN][1000 genomes]
rs4392731	1.00[ASN][1000 genomes]
rs4530873	1.00[ASN][1000 genomes]
rs57461230	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57772972	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61515235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62427183	1.00[ASN][1000 genomes]
rs62427191	1.00[ASN][1000 genomes]
rs62427192	1.00[ASN][1000 genomes]
rs62427193	1.00[ASN][1000 genomes]
rs6909505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73591939	1.00[ASN][1000 genomes]
rs73591971	1.00[ASN][1000 genomes]
rs73597504	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73597515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73597587	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73599510	1.00[ASN][1000 genomes]
rs73599519	1.00[ASN][1000 genomes]
rs7776354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144930600-144973000	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr6:144946000-144965800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:144947000-144964800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:144947000-144969200	Weak transcription	Fetal Kidney	kidney
5	chr6:144948400-144973600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr6:144949000-144965200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr6:144949200-144980200	Weak transcription	Fetal Thymus	thymus
8	chr6:144950200-144973600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr6:144951000-144974800	Weak transcription	Primary B cells from cord blood	blood
10	chr6:144951200-144974800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr6:144951600-144975000	Weak transcription	Primary T cells from cord blood	blood
12	chr6:144951800-144977600	Weak transcription	Dnd41	blood
13	chr6:144952600-144974600	Weak transcription	Primary B cells from peripheral blood	blood
14	chr6:144956600-144965000	Weak transcription	HepG2	liver
15	chr6:144957000-144966600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:144958000-144961200	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr6:144958400-144962400	Weak transcription	Ovary	ovary
18	chr6:144958400-144964800	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr6:144959000-144965800	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr6:144959400-144962200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr6:144959600-144969200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:144959600-144974800	Weak transcription	Stomach Mucosa	stomach
23	chr6:144960200-144961400	Enhancers	Fetal Heart	heart
24	chr6:144960400-144961400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:144960600-144961200	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr6:144960600-144961400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr6:144960800-144961200	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr6:144960800-144961200	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr6:144960800-144961400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
30	chr6:144961000-144961200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:144961000-144961200	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr6:144961000-144961200	Enhancers	Left Ventricle	heart
33	chr6:144961000-144961200	Enhancers	Psoas Muscle	Psoas
34	chr6:144961000-144961600	Enhancers	Fetal Lung	lung
35	chr6:144961000-144962600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr6:144961000-144963400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr6:144961000-144964400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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