The 2.0 version of rSNPBase

Variant report

Variant rs62427193
Chromosome Location chr6:145002403-145002404
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:102 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:144981200-145031000 Weak transcription Placenta Placenta
2 chr6:144982800-145010000 Weak transcription Fetal Stomach stomach
3 chr6:144983000-145024600 Weak transcription Fetal Kidney kidney
4 chr6:144985000-145004200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
5 chr6:144996000-145010000 Weak transcription H1 Cell Line embryonic stem cell
6 chr6:144996600-145004000 Weak transcription Primary T helper naive cells fromperipheralblood blood
7 chr6:144996600-145004000 Weak transcription Thymus Thymus
8 chr6:144996600-145004200 Weak transcription HSMMtube muscle
9 chr6:144996600-145007400 Weak transcription HUES48 Cell Line embryonic stem cell
10 chr6:144996600-145018400 Weak transcription Rectal Smooth Muscle rectum
11 chr6:144996600-145052400 Weak transcription Primary T killer memory cells from peripheral blood blood
12 chr6:144996800-145007400 Weak transcription Duodenum Mucosa Duodenum
13 chr6:144996800-145009800 Weak transcription iPS-15b Cell Line embryonic stem cell
14 chr6:144997000-145004000 Weak transcription Stomach Smooth Muscle stomach
15 chr6:144997000-145004200 Weak transcription Fetal Muscle Leg muscle
16 chr6:144997000-145004200 Weak transcription Gastric stomach
17 chr6:144997000-145004200 Weak transcription Pancreas Pancrea
18 chr6:144997000-145004200 Weak transcription Psoas Muscle Psoas
19 chr6:144997000-145004200 Weak transcription Rectal Mucosa Donor 29 rectum
20 chr6:144997000-145004200 Weak transcription Sigmoid Colon Sigmoid Colon
21 chr6:144997000-145006200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
22 chr6:144997000-145006400 Weak transcription Primary T killer naive cells fromperipheralblood blood
23 chr6:144997000-145006600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
24 chr6:144997000-145008000 Weak transcription Duodenum Smooth Muscle Duodenum
25 chr6:144997000-145008000 Weak transcription Rectal Mucosa Donor 31 rectum
26 chr6:144997000-145008600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
27 chr6:144997000-145009400 Weak transcription HMEC breast
28 chr6:144997000-145010000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
29 chr6:144997000-145010000 Weak transcription Fetal Intestine Small intestine
30 chr6:144997000-145010000 Weak transcription Spleen Spleen
31 chr6:144997000-145010200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
32 chr6:144997000-145010200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
33 chr6:144997000-145010600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
34 chr6:144997000-145010600 Weak transcription Skeletal Muscle Female skeletal muscle
35 chr6:144997000-145011000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
36 chr6:144997000-145011400 Weak transcription H9 Cell Line embryonic stem cell
37 chr6:144997000-145011800 Weak transcription Colonic Mucosa Colon
38 chr6:144997000-145017600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
39 chr6:144997200-145018000 Weak transcription NHLF lung
40 chr6:144997800-145007400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
41 chr6:144998600-145007400 Weak transcription GM12878-XiMat blood
42 chr6:144999400-145003000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
43 chr6:144999400-145006200 Strong transcription Primary B cells from cord blood blood
44 chr6:144999400-145013200 Weak transcription iPS-18 Cell Line embryonic stem cell
45 chr6:144999400-145025400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
46 chr6:144999600-145002800 Strong transcription HepG2 liver
47 chr6:144999600-145003000 Enhancers Primary neutrophils fromperipheralblood blood
48 chr6:144999600-145003200 Strong transcription Primary T cells fromperipheralblood blood
49 chr6:144999600-145007000 Strong transcription Dnd41 blood
50 chr6:144999800-145004200 Weak transcription Breast Myoepithelial Primary Cells Breast

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Last update: Aug 31, 2015