Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1388993	1.00[EUR][1000 genomes]
rs1388995	1.00[EUR][1000 genomes]
rs1492751	1.00[EUR][1000 genomes]
rs1586892	1.00[EUR][1000 genomes]
rs17008215	1.00[EUR][1000 genomes]
rs17008226	1.00[EUR][1000 genomes]
rs17008247	1.00[EUR][1000 genomes]
rs2100621	1.00[EUR][1000 genomes]
rs2893091	1.00[EUR][1000 genomes]
rs57913129	1.00[EUR][1000 genomes]
rs58495425	1.00[EUR][1000 genomes]
rs72912728	1.00[EUR][1000 genomes]
rs72912730	1.00[EUR][1000 genomes]
rs72912744	1.00[EUR][1000 genomes]
rs72912745	1.00[EUR][1000 genomes]
rs72912777	1.00[EUR][1000 genomes]
rs72923360	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72923361	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72923363	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72923389	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72923400	1.00[EUR][1000 genomes]
rs73845286	1.00[EUR][1000 genomes]
rs7667465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125499600-125524400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:125500200-125506200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:125503200-125511200	Weak transcription	Aorta	Aorta
4	chr4:125504600-125506800	Weak transcription	Fetal Stomach	stomach

Quick Search: