Variant report

Variant	rs58899332
Chromosome Location	chr15:49633471-49633472
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs58022202	0.89[AFR][1000 genomes]
rs59149083	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73390379	0.89[AFR][1000 genomes]
rs73392250	1.00[AFR][1000 genomes]
rs73392255	1.00[AFR][1000 genomes]
rs73394396	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400244	1.00[AMR][1000 genomes]
rs73408126	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039220	chr15:49492509-49644261	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833002	chr15:49621400-49781799	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49599200-49636800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:49612200-49639000	Weak transcription	NHEK	skin
3	chr15:49612600-49639400	Weak transcription	Right Ventricle	heart
4	chr15:49612800-49638000	Weak transcription	Brain Angular Gyrus	brain
5	chr15:49613600-49633800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr15:49613600-49637200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr15:49613600-49643000	Weak transcription	Pancreas	Pancrea
8	chr15:49613800-49639800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr15:49614200-49637200	Weak transcription	Primary B cells from peripheral blood	blood
10	chr15:49614200-49640200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr15:49614200-49640200	Weak transcription	Small Intestine	intestine
12	chr15:49614400-49634000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:49614800-49639000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr15:49615800-49633600	Weak transcription	Placenta	Placenta
15	chr15:49615800-49636600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr15:49616000-49641400	Weak transcription	Fetal Lung	lung
17	chr15:49622600-49642600	Weak transcription	HSMM	muscle
18	chr15:49623000-49633800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr15:49623000-49640200	Weak transcription	Primary T cells from cord blood	blood
20	chr15:49623200-49646000	Weak transcription	Left Ventricle	heart
21	chr15:49623400-49635800	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr15:49623400-49636800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr15:49623400-49638200	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr15:49623400-49638400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr15:49623400-49639600	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr15:49623400-49639800	Weak transcription	Fetal Muscle Trunk	muscle
27	chr15:49623400-49640000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr15:49623400-49647600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr15:49623800-49640200	Weak transcription	Liver	Liver
30	chr15:49628400-49633800	Weak transcription	Spleen	Spleen
31	chr15:49628600-49640800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr15:49629400-49639000	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr15:49631000-49636200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr15:49631800-49635600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr15:49632000-49638200	Weak transcription	Aorta	Aorta
36	chr15:49632000-49640200	Weak transcription	Ovary	ovary
37	chr15:49632400-49636200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr15:49632400-49636800	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr15:49632400-49638600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr15:49632400-49639600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr15:49632400-49643000	Weak transcription	Lung	lung
42	chr15:49632600-49634200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr15:49632600-49640200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr15:49633400-49635800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr15:49633400-49636800	Weak transcription	H1 Cell Line	embryonic stem cell

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