Variant report

Variant	rs59149083
Chromosome Location	chr15:49642557-49642558
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs58022202	0.94[AFR][1000 genomes]
rs58899332	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73390379	0.94[AFR][1000 genomes]
rs73392250	0.94[AFR][1000 genomes]
rs73392255	0.94[AFR][1000 genomes]
rs73394396	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400244	1.00[AMR][1000 genomes]
rs73408126	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039220	chr15:49492509-49644261	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833002	chr15:49621400-49781799	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49613600-49643000	Weak transcription	Pancreas	Pancrea
2	chr15:49622600-49642600	Weak transcription	HSMM	muscle
3	chr15:49623200-49646000	Weak transcription	Left Ventricle	heart
4	chr15:49623400-49647600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:49632400-49643000	Weak transcription	Lung	lung
6	chr15:49636200-49645200	Weak transcription	HUVEC	blood vessel
7	chr15:49637600-49644000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr15:49638800-49642600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr15:49638800-49643000	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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