Variant report
Variant | rs58909975 |
---|---|
Chromosome Location | chr1:221856509-221856510 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:221856331..221858298-chr1:221862068..221864560,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs56740608 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs57715531 | 1.00[AMR][1000 genomes] |
rs57966484 | 1.00[AMR][1000 genomes] |
rs58032434 | 0.83[AFR][1000 genomes] |
rs73108905 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73108910 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73108925 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73108947 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73108957 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73115363 | 1.00[AMR][1000 genomes] |
rs73115368 | 1.00[AMR][1000 genomes] |
rs73115373 | 1.00[AMR][1000 genomes] |
rs73115380 | 1.00[AMR][1000 genomes] |
rs73115383 | 1.00[AMR][1000 genomes] |
rs73117537 | 1.00[AMR][1000 genomes] |
rs73117543 | 1.00[AMR][1000 genomes] |
rs73117544 | 1.00[AMR][1000 genomes] |
rs73121116 | 1.00[AMR][1000 genomes] |
rs73121119 | 1.00[AMR][1000 genomes] |
rs73121125 | 1.00[AMR][1000 genomes] |
rs73123136 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73123141 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73123147 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73123162 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73123166 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv997685 | chr1:220993527-221863416 | Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
2 | nsv535299 | chr1:220993527-221863416 | Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
3 | nsv469786 | chr1:221855871-222040335 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
4 | nsv482867 | chr1:221855871-222040335 | Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:221846000-221861000 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
2 | chr1:221846000-221869400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |