Variant report

Variant	rs73115363
Chromosome Location	chr1:221743030-221743031
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10495165	0.91[AFR][1000 genomes]
rs10495166	0.91[AFR][1000 genomes]
rs10495167	0.91[AFR][1000 genomes]
rs10495168	0.91[AFR][1000 genomes]
rs11807981	1.00[EUR][1000 genomes]
rs12403055	0.91[AFR][1000 genomes]
rs12404274	0.87[AFR][1000 genomes]
rs12405504	0.91[AFR][1000 genomes]
rs12410562	0.91[AFR][1000 genomes]
rs12411238	0.87[AFR][1000 genomes]
rs17010272	0.95[AFR][1000 genomes]
rs17041852	0.95[AFR][1000 genomes]
rs17041853	0.95[AFR][1000 genomes]
rs35291151	1.00[EUR][1000 genomes]
rs56740608	1.00[AMR][1000 genomes]
rs57715531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57764824	1.00[EUR][1000 genomes]
rs57966484	1.00[AMR][1000 genomes]
rs58002157	0.91[AFR][1000 genomes]
rs58467896	0.91[AFR][1000 genomes]
rs58516053	0.91[AFR][1000 genomes]
rs58659812	0.91[AFR][1000 genomes]
rs58696164	0.91[AFR][1000 genomes]
rs58909975	1.00[AMR][1000 genomes]
rs59465641	1.00[EUR][1000 genomes]
rs60888785	1.00[EUR][1000 genomes]
rs61551078	1.00[EUR][1000 genomes]
rs73100441	1.00[EUR][1000 genomes]
rs73100458	1.00[EUR][1000 genomes]
rs73106612	0.91[AFR][1000 genomes]
rs73106614	0.91[AFR][1000 genomes]
rs73106616	0.91[AFR][1000 genomes]
rs73106619	0.91[AFR][1000 genomes]
rs73106621	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73106624	0.91[AFR][1000 genomes]
rs73106634	0.95[AFR][1000 genomes]
rs73108905	1.00[AMR][1000 genomes]
rs73108910	1.00[AMR][1000 genomes]
rs73108925	1.00[AMR][1000 genomes]
rs73108947	1.00[AMR][1000 genomes]
rs73108957	1.00[AMR][1000 genomes]
rs73110047	1.00[EUR][1000 genomes]
rs73110074	1.00[EUR][1000 genomes]
rs73110077	1.00[EUR][1000 genomes]
rs73110082	1.00[EUR][1000 genomes]
rs73110084	1.00[EUR][1000 genomes]
rs73115368	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73115373	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73115380	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73115383	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73116211	0.83[AFR][1000 genomes]
rs73116215	0.87[AFR][1000 genomes]
rs73116221	0.87[AFR][1000 genomes]
rs73117537	1.00[AMR][1000 genomes]
rs73117543	1.00[AMR][1000 genomes]
rs73117544	1.00[AMR][1000 genomes]
rs73117996	0.87[AFR][1000 genomes]
rs73117998	0.87[AFR][1000 genomes]
rs73118002	0.87[AFR][1000 genomes]
rs73119903	0.87[AFR][1000 genomes]
rs73119916	0.87[AFR][1000 genomes]
rs73119926	0.87[AFR][1000 genomes]
rs73119928	0.87[AFR][1000 genomes]
rs73119929	0.91[AFR][1000 genomes]
rs73119932	0.91[AFR][1000 genomes]
rs73119935	0.91[AFR][1000 genomes]
rs73119938	0.91[AFR][1000 genomes]
rs73119939	0.91[AFR][1000 genomes]
rs73119945	0.87[AFR][1000 genomes]
rs73119947	0.91[AFR][1000 genomes]
rs73119948	0.91[AFR][1000 genomes]
rs73121116	1.00[AMR][1000 genomes]
rs73121119	1.00[AMR][1000 genomes]
rs73121125	1.00[AMR][1000 genomes]
rs73123136	1.00[AMR][1000 genomes]
rs73123139	1.00[EUR][1000 genomes]
rs73123141	1.00[AMR][1000 genomes]
rs73123147	1.00[AMR][1000 genomes]
rs73123162	1.00[AMR][1000 genomes]
rs73123166	1.00[AMR][1000 genomes]
rs7355120	1.00[EUR][1000 genomes]
rs7552125	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873200	chr1:221644180-221843191	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1009838	chr1:221692621-221773945	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv535301	chr1:221692621-221773945	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv1809909	chr1:221740539-221754260	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv2760080	chr1:221742890-221763387	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221729800-221748600	Weak transcription	Left Ventricle	heart
2	chr1:221729800-221748800	Weak transcription	Pancreas	Pancrea
3	chr1:221739400-221747000	Weak transcription	Adipose Nuclei	Adipose
4	chr1:221741400-221746600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr1:221741600-221746600	Weak transcription	Psoas Muscle	Psoas
6	chr1:221741600-221746600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr1:221741600-221746800	Weak transcription	Fetal Heart	heart

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