Variant report
| Variant | rs73110084 |
|---|---|
| Chromosome Location | chr1:221669426-221669427 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:221644525..221647511-chr1:221668649..221670160,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11807981 | 1.00[EUR][1000 genomes] |
| rs35291151 | 1.00[EUR][1000 genomes] |
| rs57715531 | 1.00[EUR][1000 genomes] |
| rs57764824 | 0.95[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59465641 | 0.95[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60888785 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61551078 | 1.00[EUR][1000 genomes] |
| rs6656180 | 1.00[AFR][1000 genomes] |
| rs73100441 | 1.00[EUR][1000 genomes] |
| rs73100458 | 1.00[EUR][1000 genomes] |
| rs73106621 | 1.00[EUR][1000 genomes] |
| rs73110047 | 1.00[EUR][1000 genomes] |
| rs73110074 | 1.00[EUR][1000 genomes] |
| rs73110077 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73110082 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73115363 | 1.00[EUR][1000 genomes] |
| rs73115368 | 1.00[EUR][1000 genomes] |
| rs73115373 | 1.00[EUR][1000 genomes] |
| rs73115380 | 1.00[EUR][1000 genomes] |
| rs73115383 | 1.00[EUR][1000 genomes] |
| rs73123139 | 1.00[EUR][1000 genomes] |
| rs7355120 | 1.00[EUR][1000 genomes] |
| rs7552125 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv997685 | chr1:220993527-221863416 | Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv535299 | chr1:220993527-221863416 | Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 3 | nsv873200 | chr1:221644180-221843191 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:221668400-221671400 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
| 2 | chr1:221668400-221671400 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
