Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11807981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35291151	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57715531	1.00[EUR][1000 genomes]
rs57764824	1.00[EUR][1000 genomes]
rs59465641	1.00[EUR][1000 genomes]
rs60888785	1.00[EUR][1000 genomes]
rs61551078	1.00[EUR][1000 genomes]
rs73100458	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73106621	1.00[EUR][1000 genomes]
rs73110047	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73110074	1.00[EUR][1000 genomes]
rs73110077	1.00[EUR][1000 genomes]
rs73110082	1.00[EUR][1000 genomes]
rs73110084	1.00[EUR][1000 genomes]
rs73115363	1.00[EUR][1000 genomes]
rs73115368	1.00[EUR][1000 genomes]
rs73115373	1.00[EUR][1000 genomes]
rs73115380	1.00[EUR][1000 genomes]
rs73115383	1.00[EUR][1000 genomes]
rs7552125	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221614800-221621200	Weak transcription	Fetal Muscle Leg	muscle
2	chr1:221615600-221635000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:221615800-221620200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr1:221616200-221618600	Weak transcription	Brain Substantia Nigra	brain
5	chr1:221618000-221620800	Weak transcription	Fetal Lung	lung
6	chr1:221618000-221621200	Weak transcription	Colon Smooth Muscle	Colon
7	chr1:221618000-221623000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr1:221618200-221622400	Weak transcription	Rectal Smooth Muscle	rectum

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