Variant report

Variant	rs7552125
Chromosome Location	chr1:221666120-221666121
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11807981	1.00[EUR][1000 genomes]
rs35291151	1.00[EUR][1000 genomes]
rs57715531	1.00[EUR][1000 genomes]
rs57764824	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59465641	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60888785	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61551078	1.00[EUR][1000 genomes]
rs6656180	0.88[AFR][1000 genomes]
rs73100441	1.00[EUR][1000 genomes]
rs73100458	1.00[EUR][1000 genomes]
rs73106621	1.00[EUR][1000 genomes]
rs73110047	1.00[EUR][1000 genomes]
rs73110074	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73110077	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73110082	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73110084	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73115363	1.00[EUR][1000 genomes]
rs73115368	1.00[EUR][1000 genomes]
rs73115373	1.00[EUR][1000 genomes]
rs73115380	1.00[EUR][1000 genomes]
rs73115383	1.00[EUR][1000 genomes]
rs73123139	1.00[EUR][1000 genomes]
rs7355120	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873200	chr1:221644180-221843191	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221652200-221669000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:221662000-221667800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:221662800-221667800	Weak transcription	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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