Variant report
| Variant | rs73123139 |
|---|---|
| Chromosome Location | chr1:221832844-221832845 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:221830865..221833221-chr1:221836408..221838119,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs11808762 | 0.87[AMR][1000 genomes] |
| rs57715531 | 1.00[EUR][1000 genomes] |
| rs57764824 | 1.00[EUR][1000 genomes] |
| rs59465641 | 1.00[EUR][1000 genomes] |
| rs60888785 | 1.00[EUR][1000 genomes] |
| rs61551078 | 1.00[EUR][1000 genomes] |
| rs73106621 | 1.00[EUR][1000 genomes] |
| rs73110074 | 1.00[EUR][1000 genomes] |
| rs73110077 | 1.00[EUR][1000 genomes] |
| rs73110082 | 1.00[EUR][1000 genomes] |
| rs73110084 | 1.00[EUR][1000 genomes] |
| rs73115363 | 1.00[EUR][1000 genomes] |
| rs73115368 | 1.00[EUR][1000 genomes] |
| rs73115373 | 1.00[EUR][1000 genomes] |
| rs73115380 | 1.00[EUR][1000 genomes] |
| rs73115383 | 1.00[EUR][1000 genomes] |
| rs7355120 | 1.00[EUR][1000 genomes] |
| rs7552125 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv997685 | chr1:220993527-221863416 | Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv535299 | chr1:220993527-221863416 | Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 3 | nsv873200 | chr1:221644180-221843191 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:221832600-221833000 | Weak transcription | GM12878-XiMat | blood |
