Variant report

Variant	rs73121125
Chromosome Location	chr1:221817897-221817898
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs56740608	1.00[AMR][1000 genomes]
rs57715531	1.00[AMR][1000 genomes]
rs57966484	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58446643	0.90[AFR][1000 genomes]
rs58909975	1.00[AMR][1000 genomes]
rs61101563	0.90[AFR][1000 genomes]
rs61692302	0.81[AFR][1000 genomes]
rs73108905	1.00[AMR][1000 genomes]
rs73108910	1.00[AMR][1000 genomes]
rs73108925	1.00[AMR][1000 genomes]
rs73108947	1.00[AMR][1000 genomes]
rs73108957	1.00[AMR][1000 genomes]
rs73115363	1.00[AMR][1000 genomes]
rs73115368	1.00[AMR][1000 genomes]
rs73115373	1.00[AMR][1000 genomes]
rs73115380	1.00[AMR][1000 genomes]
rs73115383	1.00[AMR][1000 genomes]
rs73117537	1.00[AMR][1000 genomes]
rs73117543	1.00[AMR][1000 genomes]
rs73117544	1.00[AMR][1000 genomes]
rs73117560	0.81[AFR][1000 genomes]
rs73117561	0.81[AFR][1000 genomes]
rs73117564	0.81[AFR][1000 genomes]
rs73117573	0.81[AFR][1000 genomes]
rs73117575	0.81[AFR][1000 genomes]
rs73117576	0.81[AFR][1000 genomes]
rs73119195	0.90[AFR][1000 genomes]
rs73121106	0.90[AFR][1000 genomes]
rs73121110	0.90[AFR][1000 genomes]
rs73121111	0.90[AFR][1000 genomes]
rs73121113	0.90[AFR][1000 genomes]
rs73121116	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73121119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73123136	1.00[AMR][1000 genomes]
rs73123141	1.00[AMR][1000 genomes]
rs73123147	1.00[AMR][1000 genomes]
rs73123162	1.00[AMR][1000 genomes]
rs73123166	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873200	chr1:221644180-221843191	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221811600-221818000	Weak transcription	Brain Substantia Nigra	brain
2	chr1:221815600-221818200	Weak transcription	Fetal Stomach	stomach
3	chr1:221816800-221818400	Enhancers	Primary B cells from peripheral blood	blood
4	chr1:221816800-221818600	Enhancers	Fetal Lung	lung
5	chr1:221817000-221818200	Enhancers	Primary B cells from cord blood	blood
6	chr1:221817000-221818600	Enhancers	Brain Germinal Matrix	brain
7	chr1:221817200-221818400	Enhancers	Brain Cingulate Gyrus	brain
8	chr1:221817400-221818400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr1:221817400-221818600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr1:221817400-221818600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr1:221817400-221818600	Enhancers	Brain Hippocampus Middle	brain
12	chr1:221817600-221818000	Enhancers	Brain Angular Gyrus	brain
13	chr1:221817600-221818400	Enhancers	H1 Cell Line	embryonic stem cell
14	chr1:221817600-221818400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr1:221817600-221818400	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr1:221817600-221818600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr1:221817600-221818600	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr1:221817800-221818400	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr1:221817800-221818400	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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