Variant report

Variant	rs58913668
Chromosome Location	chr5:90764869-90764870
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2112914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55740065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771408	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771433	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773370	0.85[AFR][1000 genomes]
rs73773375	0.95[AFR][1000 genomes]
rs985433	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv1030453	chr5:90709080-90849693	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3414088	chr5:90744553-90861592	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90764400-90765200	Enhancers	Muscle Satellite Cultured Cells	--
2	chr5:90764400-90765400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr5:90764600-90765000	Enhancers	HSMMtube	muscle
4	chr5:90764600-90765000	Enhancers	NHDF-Ad	bronchial
5	chr5:90764600-90765400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr5:90764600-90765600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:90764600-90765800	Active TSS	Adipose Nuclei	Adipose
8	chr5:90764600-90766000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr5:90764600-90766000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr5:90764600-90766000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr5:90764600-90766200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr5:90764800-90765200	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr5:90764800-90765200	Enhancers	Aorta	Aorta
14	chr5:90764800-90765400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr5:90764800-90765800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
16	chr5:90764800-90765800	Enhancers	Primary hematopoietic stem cells	blood
17	chr5:90764800-90765800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr5:90764800-90765800	Enhancers	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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