Variant report

Variant	rs73773370
Chromosome Location	chr5:90659175-90659176
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:90658697..90660621-chr5:90660824..90663121,2	MCF-7	breast:
2	chr5:90487570..90490057-chr5:90658720..90660595,2	K562	blood:
3	chr5:90658853..90660628-chr5:90666227..90669602,3	MCF-7	breast:
4	chr5:90651589..90655979-chr5:90658781..90662164,4	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2112914	0.85[AFR][1000 genomes]
rs55740065	0.85[AFR][1000 genomes]
rs58913668	0.85[AFR][1000 genomes]
rs73771408	0.87[AFR][1000 genomes]
rs73771423	0.85[AFR][1000 genomes]
rs73773375	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90646400-90663800	Weak transcription	Thymus	Thymus
2	chr5:90649600-90663200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr5:90650600-90663800	Weak transcription	Spleen	Spleen
4	chr5:90651600-90663200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr5:90651800-90662800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr5:90652200-90663200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr5:90653400-90662400	Weak transcription	Brain Anterior Caudate	brain
8	chr5:90653400-90663000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:90653400-90663200	Weak transcription	Brain Substantia Nigra	brain
10	chr5:90653400-90663800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr5:90653400-90666800	Weak transcription	Pancreas	Pancrea
12	chr5:90653400-90670400	Weak transcription	Right Atrium	heart
13	chr5:90653600-90662400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr5:90653600-90663000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:90653600-90663000	Weak transcription	Fetal Intestine Small	intestine
16	chr5:90653600-90663000	Weak transcription	Fetal Muscle Leg	muscle
17	chr5:90653600-90663200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr5:90653600-90663200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr5:90653600-90663200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr5:90653600-90663200	Weak transcription	Fetal Kidney	kidney
21	chr5:90653600-90663200	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr5:90653600-90663400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr5:90653600-90663400	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr5:90653600-90663800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr5:90653600-90665200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr5:90653600-90665400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr5:90653600-90666200	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr5:90653600-90666200	Weak transcription	Psoas Muscle	Psoas
29	chr5:90653600-90666400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr5:90653600-90666800	Weak transcription	Gastric	stomach
31	chr5:90653600-90669400	Weak transcription	Small Intestine	intestine
32	chr5:90653800-90663200	Weak transcription	Liver	Liver
33	chr5:90653800-90663400	Weak transcription	A549	lung
34	chr5:90653800-90665800	Weak transcription	HepG2	liver
35	chr5:90654000-90663800	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr5:90654200-90663000	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr5:90654600-90663200	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr5:90654600-90663800	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr5:90654600-90666200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr5:90654800-90665400	Weak transcription	Stomach Mucosa	stomach
41	chr5:90654800-90665800	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr5:90656600-90663800	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr5:90657000-90664200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr5:90657200-90663200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr5:90657600-90663000	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr5:90657600-90663200	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr5:90657800-90663000	Weak transcription	NH-A	brain
48	chr5:90657800-90663200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr5:90657800-90664200	Weak transcription	Hela-S3	cervix
50	chr5:90657800-90664400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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