Variant report

Variant	rs73773375
Chromosome Location	chr5:90682270-90682271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:14)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:14 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr5:90682160-90682310	AG04450	lung:	n/a	n/a
2	CTCF	chr5:90682140-90682290	AG10803	skin:	n/a	n/a
3	CTCF	chr5:90682140-90682290	HCFaa	heart:	n/a	n/a
4	CTCF	chr5:90682140-90682290	HPAF	blood vessel:	n/a	n/a
5	CTCF	chr5:90682120-90682270	AG09319	gingival:	n/a	n/a
6	CTCF	chr5:90682120-90682270	HPF	lung:	n/a	n/a
7	CTCF	chr5:90682160-90682310	HAc	cerebellar:	n/a	n/a
8	CTCF	chr5:90682120-90682270	HCPEpiC	choroid plexus:	n/a	n/a
9	CTCF	chr5:90682120-90682270	HPAF	blood vessel:	n/a	n/a
10	CTCF	chr5:90682140-90682290	HA-sp	spinal cord:	n/a	n/a
11	CTCF	chr5:90682140-90682290	RPTEC	kidney:	n/a	n/a
12	CTCF	chr5:90682120-90682270	NHDF-neo	bronchial:	n/a	n/a
13	CTCF	chr5:90682120-90682270	HMF	breast:	n/a	n/a
14	CTCF	chr5:90682120-90682270	HRE	kidney:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:90512455..90524285-chr5:90673793..90683360,52	MCF-7	breast:
2	chr5:90607284..90611861-chr5:90674569..90683045,11	K562	blood:
3	chr5:90510244..90526030-chr5:90672528..90682389,53	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ARRDC3	TF binding region
ENSG00000271762	Chromatin interaction
ENSG00000248323	Chromatin interaction
ENSG00000212930	Chromatin interaction
ENSG00000251093	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2112914	0.95[AFR][1000 genomes]
rs55740065	0.95[AFR][1000 genomes]
rs58913668	0.95[AFR][1000 genomes]
rs73771408	0.98[AFR][1000 genomes]
rs73771423	0.95[AFR][1000 genomes]
rs73773370	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs985433	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90680000-90692800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:90680800-90686000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr5:90680800-90688200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr5:90681800-90682800	Enhancers	Osteobl	bone
5	chr5:90682000-90682400	Enhancers	Fetal Heart	heart
6	chr5:90682000-90682600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:90682000-90682600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr5:90682200-90682400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:90682200-90682400	Enhancers	HSMMtube	muscle
10	chr5:90682200-90693400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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