Variant report

Variant	rs58926658
Chromosome Location	chr2:190254975-190254976
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10497701	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10497702	0.81[ASN][1000 genomes]
rs10931410	0.81[EUR][1000 genomes]
rs11675295	0.81[EUR][1000 genomes]
rs11681937	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11684417	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11688806	0.81[ASN][1000 genomes]
rs13389708	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1371470	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1402369	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17198829	0.82[EUR][1000 genomes]
rs17198857	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17198892	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17271008	0.82[EUR][1000 genomes]
rs17271015	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17271036	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17271043	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17271057	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2289225	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2304701	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55822942	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56252219	0.82[EUR][1000 genomes]
rs58584769	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59031473	0.81[EUR][1000 genomes]
rs61410845	0.94[ASN][1000 genomes]
rs61528955	0.81[EUR][1000 genomes]
rs62182060	0.81[EUR][1000 genomes]
rs62182061	0.81[EUR][1000 genomes]
rs62182066	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62182070	0.94[ASN][1000 genomes]
rs62183844	0.81[EUR][1000 genomes]
rs62183845	0.81[EUR][1000 genomes]
rs62183846	0.82[EUR][1000 genomes]
rs62183847	0.82[EUR][1000 genomes]
rs62183848	0.81[EUR][1000 genomes]
rs62184647	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62184648	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62184649	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62184652	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62184653	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62187072	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62187074	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62187075	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62187077	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62187078	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62187082	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62187106	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6721290	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6747132	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72912280	0.82[EUR][1000 genomes]
rs72912286	0.82[EUR][1000 genomes]
rs72914141	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72914175	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7423067	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7564429	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875613	chr2:189999011-190324685	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv875615	chr2:190215527-190444392	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	esv3451292	chr2:190225623-190266276	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190245000-190257200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:190245600-190257200	Weak transcription	Osteobl	bone
3	chr2:190253400-190255800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:190253400-190268000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr2:190254800-190255000	Enhancers	Fetal Stomach	stomach

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