Variant report

Variant	rs62182070
Chromosome Location	chr2:190247825-190247826
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10497701	0.90[ASN][1000 genomes]
rs10497702	0.86[ASN][1000 genomes]
rs11677073	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11686908	0.84[ASN][1000 genomes]
rs11688806	0.86[ASN][1000 genomes]
rs11693810	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13389708	0.89[ASN][1000 genomes]
rs1371470	0.88[ASN][1000 genomes]
rs1402369	1.00[ASN][1000 genomes]
rs1519185	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1520862	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17198857	0.86[ASN][1000 genomes]
rs17198892	0.90[ASN][1000 genomes]
rs17271036	0.86[ASN][1000 genomes]
rs17271043	0.90[ASN][1000 genomes]
rs17271057	0.90[ASN][1000 genomes]
rs17271071	0.82[ASN][1000 genomes]
rs1996576	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2289225	0.90[ASN][1000 genomes]
rs2304701	0.90[ASN][1000 genomes]
rs2683013	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2683014	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28413975	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55822942	0.90[ASN][1000 genomes]
rs58584769	1.00[ASN][1000 genomes]
rs58926658	0.94[ASN][1000 genomes]
rs61410845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182068	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62182069	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62184647	1.00[ASN][1000 genomes]
rs62184648	1.00[ASN][1000 genomes]
rs62184649	0.96[ASN][1000 genomes]
rs62184652	0.92[ASN][1000 genomes]
rs62184653	0.92[ASN][1000 genomes]
rs62187072	0.90[ASN][1000 genomes]
rs62187074	0.86[ASN][1000 genomes]
rs62187075	0.86[ASN][1000 genomes]
rs62187078	0.80[ASN][1000 genomes]
rs62187082	0.90[ASN][1000 genomes]
rs62187106	0.86[ASN][1000 genomes]
rs6721290	0.88[ASN][1000 genomes]
rs6747132	0.96[ASN][1000 genomes]
rs72914135	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72914175	0.96[ASN][1000 genomes]
rs7423067	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875613	chr2:189999011-190324685	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv875614	chr2:190110841-190254758	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv875615	chr2:190215527-190444392	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	esv3451292	chr2:190225623-190266276	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190245000-190257200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:190245600-190257200	Weak transcription	Osteobl	bone
3	chr2:190247800-190248800	Weak transcription	HSMM	muscle

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