Variant report

Variant	rs58929329
Chromosome Location	chr5:112033408-112033409
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:112030920..112033533-chr5:112072037..112074629,2	MCF-7	breast:
2	chr5:112023980..112026718-chr5:112033004..112035530,2	K562	blood:
3	chr5:112032150..112034629-chr5:112042719..112045906,3	MCF-7	breast:
4	chr5:112032190..112036026-chr5:112043206..112045704,4	K562	blood:

Variant related genes	Relation type
ENSG00000134982	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11951746	1.00[AMR][1000 genomes]
rs17134881	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17134929	1.00[AMR][1000 genomes]
rs17135094	1.00[AMR][1000 genomes]
rs55838903	1.00[AMR][1000 genomes]
rs56004167	1.00[AMR][1000 genomes]
rs56044723	1.00[AMR][1000 genomes]
rs56224801	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57076790	1.00[AMR][1000 genomes]
rs57186392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58659317	1.00[AMR][1000 genomes]
rs58668778	0.83[AFR][1000 genomes]
rs60959200	1.00[AMR][1000 genomes]
rs61667491	1.00[AMR][1000 genomes]
rs6866838	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6875646	1.00[AMR][1000 genomes]
rs6876184	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6895431	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73214389	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73214398	0.93[AFR][1000 genomes]
rs73214399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73216208	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73216212	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73216225	0.90[AFR][1000 genomes]
rs73216228	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73216233	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73216237	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73216295	1.00[AMR][1000 genomes]
rs73216300	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73218128	1.00[AMR][1000 genomes]
rs73218131	1.00[AMR][1000 genomes]
rs73218137	1.00[AMR][1000 genomes]
rs73218139	1.00[AMR][1000 genomes]
rs73218152	1.00[AMR][1000 genomes]
rs73220040	1.00[AMR][1000 genomes]
rs73220042	1.00[AMR][1000 genomes]
rs73220045	1.00[AMR][1000 genomes]
rs73220047	1.00[AMR][1000 genomes]
rs73788579	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73791429	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73791483	1.00[AMR][1000 genomes]
rs7728137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7728636	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830450	chr5:111964170-112134510	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112031400-112034000	Enhancers	K562	blood
2	chr5:112031600-112033600	Weak transcription	Aorta	Aorta
3	chr5:112033200-112033600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:112033400-112034000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr5:112033400-112039400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr5:112033400-112042600	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links