Variant report

Variant	rs6895431
Chromosome Location	chr5:112015803-112015804
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112015114..112017797-chr5:112018212..112021156,3	K562	blood:
2	chr5:112015432..112017657-chr5:112019656..112021443,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11951746	1.00[AMR][1000 genomes]
rs17134881	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17134929	1.00[AMR][1000 genomes]
rs55838903	1.00[AMR][1000 genomes]
rs56044723	1.00[AMR][1000 genomes]
rs56224801	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57186392	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58659317	1.00[AMR][1000 genomes]
rs58668778	0.81[AFR][1000 genomes]
rs58929329	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60959200	1.00[AMR][1000 genomes]
rs61667491	1.00[AMR][1000 genomes]
rs6866838	1.00[AMR][1000 genomes]
rs6876184	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73214389	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73214398	0.90[AFR][1000 genomes]
rs73214399	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73216208	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73216212	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73216225	0.88[AFR][1000 genomes]
rs73216228	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73216233	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73216237	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73216295	1.00[AMR][1000 genomes]
rs73216300	1.00[AMR][1000 genomes]
rs73218128	1.00[AMR][1000 genomes]
rs73218131	1.00[AMR][1000 genomes]
rs73218137	1.00[AMR][1000 genomes]
rs73218139	1.00[AMR][1000 genomes]
rs73218152	1.00[AMR][1000 genomes]
rs73220040	1.00[AMR][1000 genomes]
rs73220042	1.00[AMR][1000 genomes]
rs73788579	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73791429	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73791483	1.00[AMR][1000 genomes]
rs7728137	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7728636	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv830450	chr5:111964170-112134510	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112014400-112020200	Weak transcription	Colon Smooth Muscle	Colon

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