Variant report

Variant	rs7728636
Chromosome Location	chr5:112005572-112005573
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11951746	1.00[AMR][1000 genomes]
rs17134881	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17134929	1.00[AMR][1000 genomes]
rs55838903	1.00[AMR][1000 genomes]
rs56044723	1.00[AMR][1000 genomes]
rs56224801	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57186392	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58659317	1.00[AMR][1000 genomes]
rs58929329	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60959200	1.00[AMR][1000 genomes]
rs61667491	1.00[AMR][1000 genomes]
rs6866838	1.00[AMR][1000 genomes]
rs6876184	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6895431	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73214389	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73214398	0.83[AFR][1000 genomes]
rs73214399	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73216208	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73216212	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73216225	0.81[AFR][1000 genomes]
rs73216228	1.00[AMR][1000 genomes]
rs73216233	1.00[AMR][1000 genomes]
rs73216237	1.00[AMR][1000 genomes]
rs73216295	1.00[AMR][1000 genomes]
rs73216300	1.00[AMR][1000 genomes]
rs73218128	1.00[AMR][1000 genomes]
rs73218131	1.00[AMR][1000 genomes]
rs73218137	1.00[AMR][1000 genomes]
rs73218139	1.00[AMR][1000 genomes]
rs73218152	1.00[AMR][1000 genomes]
rs73788579	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73791429	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73791483	1.00[AMR][1000 genomes]
rs7728137	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv830450	chr5:111964170-112134510	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112004600-112005600	Enhancers	Brain Inferior Temporal Lobe	brain
2	chr5:112004600-112006200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr5:112004800-112005600	Enhancers	Brain Angular Gyrus	brain
4	chr5:112004800-112005600	Enhancers	Fetal Brain Male	brain
5	chr5:112004800-112005800	Enhancers	Brain Hippocampus Middle	brain
6	chr5:112004800-112005800	Enhancers	Brain Substantia Nigra	brain
7	chr5:112004800-112007800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr5:112005000-112005600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:112005200-112007400	Enhancers	Brain Germinal Matrix	brain
10	chr5:112005400-112005600	Active TSS	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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