Variant report

Variant	rs58943867
Chromosome Location	chr4:107342809-107342810
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs28376417	0.81[ASN][1000 genomes]
rs28612412	0.91[ASN][1000 genomes]
rs28650341	0.84[ASN][1000 genomes]
rs28698564	0.91[ASN][1000 genomes]
rs60875240	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6533250	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6813164	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6816558	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6820238	1.00[ASN][1000 genomes]
rs6827991	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72883825	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72883837	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72883846	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72883854	1.00[ASN][1000 genomes]
rs72883855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72883865	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7695238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830029	chr4:107203096-107353483	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1008963	chr4:107282656-107384924	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107342200-107344000	Enhancers	Muscle Satellite Cultured Cells	--
2	chr4:107342200-107344000	Enhancers	HSMM	muscle
3	chr4:107342200-107344200	Enhancers	Osteobl	bone
4	chr4:107342200-107344400	Enhancers	HSMMtube	muscle
5	chr4:107342200-107344400	Enhancers	NHDF-Ad	bronchial
6	chr4:107342400-107343000	Enhancers	Fetal Muscle Leg	muscle
7	chr4:107342600-107343400	Enhancers	NH-A	brain
8	chr4:107342600-107343600	Enhancers	HMEC	breast
9	chr4:107342600-107343800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:107342800-107343000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:107342800-107343000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr4:107342800-107343200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:107342800-107343200	Enhancers	A549	lung
14	chr4:107342800-107343400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr4:107342800-107343400	Enhancers	Fetal Kidney	kidney
16	chr4:107342800-107343600	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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