Variant report

Variant	rs6820238
Chromosome Location	chr4:107354108-107354109
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs28376417	0.81[ASN][1000 genomes]
rs28612412	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs28650341	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs28698564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs28728148	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58943867	1.00[ASN][1000 genomes]
rs60875240	0.94[ASN][1000 genomes]
rs6533250	1.00[ASN][1000 genomes]
rs6813164	1.00[ASN][1000 genomes]
rs6816558	1.00[ASN][1000 genomes]
rs6827991	1.00[ASN][1000 genomes]
rs72883825	1.00[ASN][1000 genomes]
rs72883837	1.00[ASN][1000 genomes]
rs72883846	1.00[ASN][1000 genomes]
rs72883854	1.00[ASN][1000 genomes]
rs72883855	1.00[ASN][1000 genomes]
rs72883865	1.00[ASN][1000 genomes]
rs7695238	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008963	chr4:107282656-107384924	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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