Variant report

Variant	rs6533250
Chromosome Location	chr4:107335165-107335166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs28376417	0.81[ASN][1000 genomes]
rs28612412	0.91[ASN][1000 genomes]
rs28650341	0.84[ASN][1000 genomes]
rs28698564	0.91[ASN][1000 genomes]
rs58943867	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60875240	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6813164	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6816558	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6820238	1.00[ASN][1000 genomes]
rs6827991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72883825	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72883837	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72883846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72883854	1.00[ASN][1000 genomes]
rs72883855	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72883865	1.00[ASN][1000 genomes]
rs7695238	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830029	chr4:107203096-107353483	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1008963	chr4:107282656-107384924	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107331200-107335600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:107331200-107335600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:107331600-107335600	Weak transcription	Osteobl	bone
4	chr4:107332400-107335600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr4:107332600-107335600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr4:107332600-107339200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr4:107333400-107335600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:107333600-107335600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr4:107334800-107336200	Enhancers	NHDF-Ad	bronchial
10	chr4:107335000-107335200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr4:107335000-107336000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr4:107335000-107336000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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