Variant report

Variant	rs58951919
Chromosome Location	chr17:38126882-38126883
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:37909855..37912536-chr17:38125394..38127110,2	MCF-7	breast:
2	chr17:38125232..38127336-chr17:38133095..38135671,2	MCF-7	breast:
3	chr17:38125527..38127464-chr17:38136550..38138411,3	K562	blood:
4	chr17:38124965..38127375-chr17:38498648..38501455,2	K562	blood:
5	chr17:38121616..38123468-chr17:38125511..38128346,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108344	Chromatin interaction
ENSG00000131759	Chromatin interaction
ENSG00000167914	Chromatin interaction
ENSG00000265666	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs2227320	1.00[AMR][1000 genomes]
rs2227327	1.00[AMR][1000 genomes]
rs2227328	1.00[AMR][1000 genomes]
rs57554435	1.00[AMR][1000 genomes]
rs57870574	1.00[AMR][1000 genomes]
rs58089096	1.00[AMR][1000 genomes]
rs59309776	1.00[AMR][1000 genomes]
rs61225269	1.00[AMR][1000 genomes]
rs73293503	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295294	1.00[AMR][1000 genomes]
rs73297220	1.00[AMR][1000 genomes]
rs73301225	1.00[AMR][1000 genomes]
rs73301229	1.00[AMR][1000 genomes]
rs73301234	1.00[AMR][1000 genomes]
rs73301238	1.00[AMR][1000 genomes]
rs73302168	1.00[AMR][1000 genomes]
rs73305019	1.00[AMR][1000 genomes]
rs73307966	1.00[AMR][1000 genomes]
rs73309981	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492308	chr17:38033039-38204458	Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38110800-38128800	Weak transcription	Gastric	stomach
2	chr17:38122200-38130600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr17:38122200-38130600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr17:38124000-38127000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr17:38124000-38128000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr17:38124000-38129600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr17:38124000-38134600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr17:38124800-38127000	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr17:38124800-38127600	Enhancers	Fetal Intestine Small	intestine
10	chr17:38125000-38127200	Enhancers	Duodenum Mucosa	Duodenum
11	chr17:38125000-38127200	Enhancers	Fetal Intestine Large	intestine
12	chr17:38125200-38128400	Weak transcription	Primary B cells from cord blood	blood
13	chr17:38125400-38128000	Enhancers	Colonic Mucosa	Colon
14	chr17:38126000-38127000	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr17:38126200-38127800	Enhancers	Placenta	Placenta
16	chr17:38126400-38128000	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr17:38126600-38127000	Bivalent Enhancer	Small Intestine	intestine
18	chr17:38126600-38127000	Enhancers	Spleen	Spleen
19	chr17:38126600-38127600	Enhancers	Esophagus	oesophagus
20	chr17:38126600-38127600	Enhancers	Lung	lung
21	chr17:38126600-38127600	Enhancers	K562	blood
22	chr17:38126800-38127000	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr17:38126800-38128000	Enhancers	Monocytes-CD14+_RO01746	blood

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