Variant report

Variant	rs73301238
Chromosome Location	chr17:38155817-38155818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs2227320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2227327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2227328	1.00[AMR][1000 genomes]
rs57554435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57870574	1.00[AMR][1000 genomes]
rs58089096	1.00[AMR][1000 genomes]
rs58951919	1.00[AMR][1000 genomes]
rs59309776	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61225269	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7208267	1.00[AMR][1000 genomes]
rs73293503	1.00[AMR][1000 genomes]
rs73295294	1.00[AMR][1000 genomes]
rs73297220	1.00[AMR][1000 genomes]
rs73301225	1.00[AMR][1000 genomes]
rs73301229	1.00[AMR][1000 genomes]
rs73301234	1.00[AMR][1000 genomes]
rs73302168	1.00[AMR][1000 genomes]
rs73305019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73307966	1.00[AMR][1000 genomes]
rs73309981	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492308	chr17:38033039-38204458	Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv908220	chr17:38153473-38175426	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38147400-38157400	Weak transcription	Fetal Brain Male	brain
2	chr17:38150600-38157200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr17:38152200-38160600	Weak transcription	Psoas Muscle	Psoas
4	chr17:38152200-38160800	Weak transcription	K562	blood
5	chr17:38153200-38158400	Weak transcription	Fetal Kidney	kidney
6	chr17:38153200-38166400	Weak transcription	Fetal Lung	lung
7	chr17:38153400-38158000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr17:38153400-38166200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr17:38153400-38166600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr17:38153600-38156200	Weak transcription	HUVEC	blood vessel
11	chr17:38153600-38156800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr17:38153600-38160400	Weak transcription	HSMMtube	muscle
13	chr17:38153600-38160600	Weak transcription	Stomach Mucosa	stomach
14	chr17:38153800-38156000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr17:38153800-38156000	Weak transcription	Liver	Liver
16	chr17:38153800-38156400	Weak transcription	Osteobl	bone
17	chr17:38153800-38157000	Weak transcription	Primary B cells from cord blood	blood
18	chr17:38153800-38160600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr17:38153800-38166200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr17:38153800-38166200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr17:38153800-38172200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr17:38154000-38156000	Weak transcription	Small Intestine	intestine
23	chr17:38154000-38156800	Weak transcription	NHLF	lung
24	chr17:38154200-38156000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr17:38154200-38156200	Weak transcription	Pancreas	Pancrea
26	chr17:38154200-38156400	Weak transcription	Brain Substantia Nigra	brain
27	chr17:38154200-38156400	Weak transcription	Ovary	ovary
28	chr17:38154200-38157200	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr17:38154200-38157400	Weak transcription	Brain Germinal Matrix	brain
30	chr17:38154200-38161000	Weak transcription	Lung	lung
31	chr17:38154200-38166400	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr17:38154400-38156400	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr17:38154400-38156600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr17:38154400-38156600	Weak transcription	Colonic Mucosa	Colon
35	chr17:38154400-38156800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr17:38154400-38157000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr17:38154400-38157000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr17:38154400-38157000	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr17:38154400-38157000	Weak transcription	Right Ventricle	heart
40	chr17:38154400-38157000	Weak transcription	NHEK	skin
41	chr17:38154400-38157200	Weak transcription	HMEC	breast
42	chr17:38154400-38157400	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr17:38154400-38157600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr17:38154400-38157800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr17:38154400-38157800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr17:38154400-38158400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr17:38154400-38158800	Weak transcription	Brain Cingulate Gyrus	brain
48	chr17:38154400-38160400	Weak transcription	HepG2	liver
49	chr17:38154400-38166200	Weak transcription	Dnd41	blood
50	chr17:38154400-38166400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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