Variant report

Variant	rs73295294
Chromosome Location	chr17:38128018-38128019
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs2227320	1.00[AMR][1000 genomes]
rs2227327	1.00[AMR][1000 genomes]
rs2227328	1.00[AMR][1000 genomes]
rs57554435	1.00[AMR][1000 genomes]
rs57870574	1.00[AMR][1000 genomes]
rs58089096	1.00[AMR][1000 genomes]
rs58951919	1.00[AMR][1000 genomes]
rs59309776	1.00[AMR][1000 genomes]
rs61225269	1.00[AMR][1000 genomes]
rs73293503	1.00[AMR][1000 genomes]
rs73297220	1.00[AMR][1000 genomes]
rs73301225	1.00[AMR][1000 genomes]
rs73301229	1.00[AMR][1000 genomes]
rs73301234	1.00[AMR][1000 genomes]
rs73301238	1.00[AMR][1000 genomes]
rs73302168	1.00[AMR][1000 genomes]
rs73305019	1.00[AMR][1000 genomes]
rs73307966	1.00[AMR][1000 genomes]
rs73309981	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492308	chr17:38033039-38204458	Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38110800-38128800	Weak transcription	Gastric	stomach
2	chr17:38122200-38130600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr17:38122200-38130600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr17:38124000-38129600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr17:38124000-38134600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr17:38125200-38128400	Weak transcription	Primary B cells from cord blood	blood
7	chr17:38127400-38128200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
8	chr17:38127400-38129200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
9	chr17:38127600-38128200	Bivalent Enhancer	Fetal Thymus	thymus
10	chr17:38127800-38128200	Enhancers	K562	blood
11	chr17:38127800-38129000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr17:38127800-38130200	Weak transcription	Placenta	Placenta
13	chr17:38128000-38128200	Bivalent Enhancer	HSMM	muscle
14	chr17:38128000-38128400	Enhancers	Primary hematopoietic stem cells	blood
15	chr17:38128000-38129000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr17:38128000-38129600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr17:38128000-38131400	Enhancers	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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