Variant report

Variant	rs58964961
Chromosome Location	chr7:150430849-150430850
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXM1	chr7:150430430-150430956	GM12878	blood:	n/a	n/a
2	NFIC	chr7:150430215-150430970	GM12878	blood:	n/a	n/a
3	ATF2	chr7:150430402-150430891	GM12878	blood:	n/a	n/a
4	MTA3	chr7:150429988-150432032	GM12878	blood:	n/a	n/a
5	BATF	chr7:150430294-150430966	GM12878	blood:	n/a	n/a
6	NFIC	chr7:150430331-150430943	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:150430382..150432890-chr7:150434704..150436379,2	K562	blood:

Variant related genes	Relation type
GIMAP5	TF binding region
ENSG00000196329	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11980764	1.00[EUR][1000 genomes]
rs11981656	1.00[EUR][1000 genomes]
rs17173611	1.00[EUR][1000 genomes]
rs35972858	1.00[EUR][1000 genomes]
rs56772195	1.00[EUR][1000 genomes]
rs57098462	1.00[EUR][1000 genomes]
rs57209080	1.00[EUR][1000 genomes]
rs57577681	1.00[EUR][1000 genomes]
rs59129336	1.00[EUR][1000 genomes]
rs59138292	1.00[EUR][1000 genomes]
rs59687117	1.00[EUR][1000 genomes]
rs60053813	1.00[EUR][1000 genomes]
rs60570249	1.00[EUR][1000 genomes]
rs60819907	1.00[EUR][1000 genomes]
rs61393929	1.00[EUR][1000 genomes]
rs61698476	1.00[EUR][1000 genomes]
rs73474810	1.00[EUR][1000 genomes]
rs73474820	1.00[EUR][1000 genomes]
rs73474823	1.00[EUR][1000 genomes]
rs73474832	1.00[EUR][1000 genomes]
rs73474857	1.00[EUR][1000 genomes]
rs73727408	1.00[EUR][1000 genomes]
rs73727410	1.00[EUR][1000 genomes]
rs73727411	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	esv2758617	chr7:150251949-150463804	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	esv2759573	chr7:150251949-150463804	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv967475	chr7:150323577-150610034	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
9	nsv831187	chr7:150325913-150503500	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150422000-150433600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr7:150425000-150432600	Weak transcription	Thymus	Thymus
3	chr7:150426600-150432000	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr7:150426800-150432800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr7:150429000-150431200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr7:150429000-150431800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr7:150429000-150432600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr7:150429000-150434000	Enhancers	GM12878-XiMat	blood
9	chr7:150429400-150433200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr7:150429600-150432600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr7:150430000-150432200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
12	chr7:150430400-150431600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr7:150430400-150431800	Weak transcription	Dnd41	blood
14	chr7:150430400-150433200	Enhancers	Primary T cells fromperipheralblood	blood
15	chr7:150430600-150431000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr7:150430600-150431400	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr7:150430600-150431600	Weak transcription	Primary T cells from cord blood	blood
18	chr7:150430600-150431800	Weak transcription	Fetal Thymus	thymus
19	chr7:150430600-150432600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr7:150430800-150431200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood

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