Variant report

Variant	rs73727408
Chromosome Location	chr7:150473730-150473731
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:150473335..150475670-chr7:150486158..150488917,3	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11980764	1.00[EUR][1000 genomes]
rs11981656	1.00[EUR][1000 genomes]
rs17173611	1.00[EUR][1000 genomes]
rs35972858	1.00[EUR][1000 genomes]
rs56772195	1.00[EUR][1000 genomes]
rs57098462	1.00[EUR][1000 genomes]
rs57209080	1.00[EUR][1000 genomes]
rs57577681	1.00[EUR][1000 genomes]
rs58964961	1.00[EUR][1000 genomes]
rs59129336	1.00[EUR][1000 genomes]
rs59138292	1.00[EUR][1000 genomes]
rs60053813	1.00[EUR][1000 genomes]
rs60570249	1.00[EUR][1000 genomes]
rs61698476	1.00[EUR][1000 genomes]
rs73474810	1.00[EUR][1000 genomes]
rs73474820	1.00[EUR][1000 genomes]
rs73474823	1.00[EUR][1000 genomes]
rs73474832	1.00[EUR][1000 genomes]
rs73474857	1.00[EUR][1000 genomes]
rs73727410	1.00[EUR][1000 genomes]
rs73727411	1.00[EUR][1000 genomes]
rs9770044	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv967475	chr7:150323577-150610034	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv831187	chr7:150325913-150503500	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150462800-150480800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:150467800-150474200	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr7:150468000-150476400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:150472800-150477600	Weak transcription	Fetal Intestine Small	intestine
5	chr7:150473400-150473800	Enhancers	Liver	Liver
6	chr7:150473600-150477400	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr7:150473600-150479000	Weak transcription	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links