Variant report

Variant	rs73474832
Chromosome Location	chr7:150329188-150329189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11980764	1.00[EUR][1000 genomes]
rs11981656	1.00[EUR][1000 genomes]
rs13231699	1.00[EUR][1000 genomes]
rs17173611	1.00[EUR][1000 genomes]
rs1916008	1.00[EUR][1000 genomes]
rs35972858	1.00[EUR][1000 genomes]
rs56772195	1.00[EUR][1000 genomes]
rs57098462	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57209080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57577681	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58964961	1.00[EUR][1000 genomes]
rs59129336	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59138292	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59289349	1.00[AMR][1000 genomes]
rs59687117	1.00[EUR][1000 genomes]
rs60053813	1.00[EUR][1000 genomes]
rs60570249	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60819907	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61393929	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61698476	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73474810	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73474820	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73474823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73474857	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73727408	1.00[EUR][1000 genomes]
rs73727410	1.00[EUR][1000 genomes]
rs73727411	1.00[EUR][1000 genomes]
rs7785863	1.00[EUR][1000 genomes]
rs7793974	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	esv2758617	chr7:150251949-150463804	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	esv2759573	chr7:150251949-150463804	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	esv3388935	chr7:150301204-150374532	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	nsv967475	chr7:150323577-150610034	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
10	nsv831187	chr7:150325913-150503500	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150324000-150329200	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr7:150327400-150329400	Active TSS	Stomach Smooth Muscle	stomach
3	chr7:150327400-150329800	Active TSS	Duodenum Mucosa	Duodenum
4	chr7:150327600-150329200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
5	chr7:150327600-150329600	Active TSS	Placenta	Placenta
6	chr7:150327600-150329800	Active TSS	Esophagus	oesophagus
7	chr7:150327600-150329800	Active TSS	Rectal Smooth Muscle	rectum
8	chr7:150327600-150330000	Active TSS	Brain Hippocampus Middle	brain
9	chr7:150327600-150330000	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr7:150327600-150330000	Active TSS	Skeletal Muscle Male	skeletal muscle
11	chr7:150327600-150330000	Flanking Active TSS	HUVEC	blood vessel
12	chr7:150327800-150329400	Active TSS	Pancreas	Pancrea
13	chr7:150327800-150329600	Active TSS	Liver	Liver
14	chr7:150327800-150329600	Active TSS	Lung	lung
15	chr7:150327800-150329800	Active TSS	Skeletal Muscle Female	skeletal muscle
16	chr7:150327800-150330000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
17	chr7:150327800-150330000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr7:150327800-150330000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
19	chr7:150327800-150330000	Active TSS	Right Atrium	heart
20	chr7:150327800-150330200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr7:150328000-150329400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr7:150328000-150329400	Active TSS	Rectal Mucosa Donor 31	rectum
23	chr7:150328000-150329600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
24	chr7:150328000-150329600	Active TSS	Primary T killer memory cells from peripheral blood	blood
25	chr7:150328000-150329600	Active TSS	Adipose Nuclei	Adipose
26	chr7:150328000-150329600	Active TSS	Fetal Muscle Trunk	muscle
27	chr7:150328000-150329800	Active TSS	Brain Anterior Caudate	brain
28	chr7:150328000-150329800	Active TSS	Duodenum Smooth Muscle	Duodenum
29	chr7:150328000-150329800	Active TSS	Fetal Muscle Leg	muscle
30	chr7:150328000-150329800	Active TSS	Sigmoid Colon	Sigmoid Colon
31	chr7:150328000-150330000	Active TSS	Primary T cells fromperipheralblood	blood
32	chr7:150328000-150330000	Flanking Active TSS	Primary hematopoietic stem cells	blood
33	chr7:150328000-150330000	Active TSS	Psoas Muscle	Psoas
34	chr7:150328200-150329200	Active TSS	Spleen	Spleen
35	chr7:150328200-150329200	Enhancers	NHEK	skin
36	chr7:150328200-150329400	Active TSS	Brain Substantia Nigra	brain
37	chr7:150328200-150329400	Active TSS	Colonic Mucosa	Colon
38	chr7:150328200-150329400	Active TSS	Colon Smooth Muscle	Colon
39	chr7:150328200-150329400	Active TSS	Fetal Intestine Large	intestine
40	chr7:150328200-150329600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
41	chr7:150328200-150329600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
42	chr7:150328200-150329600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr7:150328200-150329600	Active TSS	Fetal Stomach	stomach
44	chr7:150328200-150329800	Active TSS	Left Ventricle	heart
45	chr7:150328200-150329800	Active TSS	GM12878-XiMat	blood
46	chr7:150328200-150330200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
47	chr7:150328400-150329400	Active TSS	Brain Cingulate Gyrus	brain
48	chr7:150328400-150329400	Active TSS	Brain Inferior Temporal Lobe	brain
49	chr7:150328400-150329400	Active TSS	Pancreatic Islets	Pancreatic Islet
50	chr7:150328400-150329400	Active TSS	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links