Variant report

Variant	rs58984910
Chromosome Location	chr2:58341517-58341518
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17049347	0.91[AFR][1000 genomes]
rs17049370	0.95[AFR][1000 genomes]
rs17049374	0.95[AFR][1000 genomes]
rs55925609	0.95[AFR][1000 genomes]
rs59264390	0.87[AFR][1000 genomes]
rs59299963	0.89[AFR][1000 genomes]
rs60912631	0.95[AFR][1000 genomes]
rs61126591	0.93[AFR][1000 genomes]
rs73942281	0.89[AFR][1000 genomes]
rs73944812	0.95[AFR][1000 genomes]
rs73944819	0.93[AFR][1000 genomes]
rs73944823	0.90[AFR][1000 genomes]
rs73944825	0.95[AFR][1000 genomes]
rs73944827	0.91[AFR][1000 genomes]
rs73944837	0.93[AFR][1000 genomes]
rs73944838	0.86[AFR][1000 genomes]
rs73944840	0.88[AFR][1000 genomes]
rs7587116	0.91[AFR][1000 genomes]
rs7587229	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525988	chr2:58161520-58427786	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv582097	chr2:58266099-58346966	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv874201	chr2:58269871-58350504	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv874202	chr2:58269871-58375688	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv999042	chr2:58326123-58530903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv535734	chr2:58326123-58530903	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58282600-58350400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr2:58303000-58358800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr2:58311200-58382400	Weak transcription	Aorta	Aorta
4	chr2:58315200-58389600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr2:58318200-58373200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr2:58319400-58358400	Weak transcription	Ovary	ovary
7	chr2:58319800-58349800	Weak transcription	Primary T cells from cord blood	blood
8	chr2:58319800-58350800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr2:58319800-58359000	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr2:58319800-58367200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr2:58320000-58347600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr2:58320000-58359000	Weak transcription	Left Ventricle	heart
13	chr2:58322200-58347400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr2:58322600-58349800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr2:58322600-58350400	Weak transcription	Primary B cells from peripheral blood	blood
16	chr2:58323200-58347600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr2:58323200-58350400	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr2:58323600-58350200	Weak transcription	Liver	Liver
19	chr2:58326400-58347600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr2:58327000-58347600	Weak transcription	Primary hematopoietic stem cells	blood
21	chr2:58332400-58370800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr2:58333000-58341800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr2:58335200-58348200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr2:58335600-58347800	Weak transcription	Adipose Nuclei	Adipose
25	chr2:58335800-58350600	Weak transcription	Brain Hippocampus Middle	brain
26	chr2:58335800-58358600	Weak transcription	Brain Anterior Caudate	brain
27	chr2:58336400-58365000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr2:58337000-58358600	Weak transcription	NHLF	lung
29	chr2:58337200-58358400	Weak transcription	Fetal Muscle Leg	muscle
30	chr2:58338000-58358400	Weak transcription	Fetal Stomach	stomach
31	chr2:58338200-58347000	Weak transcription	GM12878-XiMat	blood
32	chr2:58338200-58365400	Weak transcription	Fetal Intestine Small	intestine
33	chr2:58338400-58347000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr2:58338600-58347600	Weak transcription	Primary B cells from cord blood	blood
35	chr2:58338800-58359000	Weak transcription	HepG2	liver
36	chr2:58339000-58350000	Weak transcription	Dnd41	blood
37	chr2:58340000-58358400	Weak transcription	NH-A	brain
38	chr2:58340200-58347000	Weak transcription	NHDF-Ad	bronchial
39	chr2:58340200-58349600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr2:58340600-58342600	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr2:58340600-58347600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr2:58340600-58349000	Weak transcription	Osteobl	bone
43	chr2:58340600-58349800	Weak transcription	HUVEC	blood vessel
44	chr2:58340600-58350200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr2:58340600-58358400	Weak transcription	HMEC	breast
46	chr2:58340600-58363000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr2:58340600-58367000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr2:58340600-58373600	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr2:58340800-58346200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr2:58341000-58346200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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