Variant report

Variant	rs73944819
Chromosome Location	chr2:58358828-58358829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:58358163..58360971-chr2:58362673..58364987,2	K562	blood:
2	chr2:58357790..58359508-chr2:58365706..58367411,2	MCF-7	breast:
3	chr2:58358175..58358895-chr2:58675153..58675770,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs17049347	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17049370	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17049374	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17049404	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55925609	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56878245	1.00[AMR][1000 genomes]
rs58495080	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58984910	0.93[AFR][1000 genomes]
rs59264390	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59299963	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59871174	1.00[AMR][1000 genomes]
rs60912631	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61126591	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61415878	1.00[AMR][1000 genomes]
rs6741122	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73942251	1.00[AMR][1000 genomes]
rs73942258	1.00[AMR][1000 genomes]
rs73942281	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73944812	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73944823	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73944825	0.89[AFR][1000 genomes]
rs73944826	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73944827	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73944828	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73944835	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73944837	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73944838	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73944839	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73944840	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7587116	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7587229	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525988	chr2:58161520-58427786	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv874202	chr2:58269871-58375688	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv999042	chr2:58326123-58530903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv535734	chr2:58326123-58530903	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58311200-58382400	Weak transcription	Aorta	Aorta
2	chr2:58315200-58389600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr2:58318200-58373200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr2:58319800-58359000	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr2:58319800-58367200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr2:58320000-58359000	Weak transcription	Left Ventricle	heart
7	chr2:58332400-58370800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr2:58336400-58365000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:58338200-58365400	Weak transcription	Fetal Intestine Small	intestine
10	chr2:58338800-58359000	Weak transcription	HepG2	liver
11	chr2:58340600-58363000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr2:58340600-58367000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr2:58340600-58373600	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr2:58344400-58386000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr2:58346000-58384400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr2:58346600-58373600	Weak transcription	NHEK	skin
17	chr2:58346800-58387200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr2:58347000-58360800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr2:58347200-58360200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr2:58347200-58373800	Weak transcription	Hela-S3	cervix
21	chr2:58347800-58369800	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr2:58347800-58384000	Weak transcription	Fetal Kidney	kidney
23	chr2:58347800-58386600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr2:58348000-58360600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr2:58348200-58360600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr2:58348400-58373400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr2:58348400-58373600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr2:58348600-58382400	Weak transcription	Fetal Intestine Large	intestine
29	chr2:58348800-58365600	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr2:58349000-58421200	Weak transcription	Brain Substantia Nigra	brain
31	chr2:58350400-58363600	Weak transcription	Right Ventricle	heart
32	chr2:58350400-58383800	Weak transcription	K562	blood
33	chr2:58350800-58367400	Weak transcription	Primary T cells from cord blood	blood
34	chr2:58350800-58370800	Weak transcription	Liver	Liver
35	chr2:58351000-58364600	Weak transcription	HUVEC	blood vessel
36	chr2:58351000-58371800	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr2:58351000-58382400	Weak transcription	Esophagus	oesophagus
38	chr2:58351000-58384600	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr2:58351200-58362200	Weak transcription	Dnd41	blood
40	chr2:58351200-58365800	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr2:58351600-58359200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr2:58353800-58388200	Weak transcription	Small Intestine	intestine
43	chr2:58357000-58359200	Enhancers	Adipose Nuclei	Adipose
44	chr2:58357000-58361000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr2:58357000-58363600	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr2:58357400-58359000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr2:58358000-58366400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr2:58358200-58359400	Enhancers	Osteobl	bone
49	chr2:58358200-58359800	Enhancers	Colon Smooth Muscle	Colon
50	chr2:58358200-58393800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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