Variant report

Variant	rs59299963
Chromosome Location	chr2:58253662-58253663
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs17049347	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17049370	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17049374	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17049404	1.00[AMR][1000 genomes]
rs55925609	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56878245	1.00[AMR][1000 genomes]
rs58495080	1.00[AMR][1000 genomes]
rs58984910	0.89[AFR][1000 genomes]
rs59264390	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59871174	1.00[AMR][1000 genomes]
rs60912631	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61126591	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61415878	1.00[AMR][1000 genomes]
rs6741122	1.00[AMR][1000 genomes]
rs73942251	1.00[AMR][1000 genomes]
rs73942258	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73942281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73944812	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73944819	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73944823	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73944825	0.84[AFR][1000 genomes]
rs73944826	1.00[AMR][1000 genomes]
rs73944827	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73944828	1.00[AMR][1000 genomes]
rs73944835	1.00[AMR][1000 genomes]
rs73944837	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73944838	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73944839	1.00[AMR][1000 genomes]
rs73944840	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7587116	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7587229	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834159	chr2:58101262-58283655	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv525988	chr2:58161520-58427786	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv874200	chr2:58163178-58262016	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv999591	chr2:58214871-58316147	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58249600-58259800	Weak transcription	Ovary	ovary
2	chr2:58251400-58272000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr2:58251600-58258800	Weak transcription	Primary B cells from cord blood	blood
4	chr2:58251800-58258400	Weak transcription	Primary B cells from peripheral blood	blood
5	chr2:58253000-58253800	Weak transcription	GM12878-XiMat	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links