Variant report

Variant	rs58988785
Chromosome Location	chr3:98726263-98726264
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs13085453	1.00[AMR][1000 genomes]
rs56996908	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57492353	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57581846	1.00[AMR][1000 genomes]
rs58345395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58880987	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58977425	1.00[AMR][1000 genomes]
rs59256676	1.00[AMR][1000 genomes]
rs59462320	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59480491	1.00[AMR][1000 genomes]
rs59581962	1.00[AMR][1000 genomes]
rs59726038	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60266120	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60389001	1.00[AMR][1000 genomes]
rs60488063	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60718786	1.00[AMR][1000 genomes]
rs61133181	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61172524	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61517408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72923005	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72923016	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72923020	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72923040	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72923043	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72923045	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72923046	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72923053	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72923071	1.00[AMR][1000 genomes]
rs72925007	1.00[AMR][1000 genomes]
rs72925011	1.00[AMR][1000 genomes]
rs72925074	1.00[AMR][1000 genomes]
rs72925099	1.00[AMR][1000 genomes]
rs72926923	1.00[AMR][1000 genomes]
rs72926985	1.00[AMR][1000 genomes]
rs72934633	1.00[AMR][1000 genomes]
rs72934639	1.00[AMR][1000 genomes]
rs72934644	1.00[AMR][1000 genomes]
rs72934650	1.00[AMR][1000 genomes]
rs72934662	1.00[AMR][1000 genomes]
rs72934664	1.00[AMR][1000 genomes]
rs72934665	1.00[AMR][1000 genomes]
rs72934681	1.00[AMR][1000 genomes]
rs72934683	1.00[AMR][1000 genomes]
rs72934691	1.00[AMR][1000 genomes]
rs72936622	1.00[AMR][1000 genomes]
rs72936644	1.00[AMR][1000 genomes]
rs72936652	1.00[AMR][1000 genomes]
rs72936657	1.00[AMR][1000 genomes]
rs72936667	1.00[AMR][1000 genomes]
rs72936668	1.00[AMR][1000 genomes]
rs72938539	1.00[AMR][1000 genomes]
rs72938573	1.00[AMR][1000 genomes]
rs72938584	1.00[AMR][1000 genomes]
rs72938585	1.00[AMR][1000 genomes]
rs72940515	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72940521	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72940528	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72940538	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72940543	1.00[AMR][1000 genomes]
rs72940552	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72940570	1.00[AMR][1000 genomes]
rs72940573	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72940576	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72940577	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72940581	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591065	chr3:98204198-98766326	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv877214	chr3:98445324-98738006	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv980100	chr3:98714787-98766962	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98717200-98730600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:98717600-98729200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:98726200-98726400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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