Variant report

Variant	rs72938573
Chromosome Location	chr3:98683013-98683014
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:98675333..98676915-chr3:98681651..98683756,2	MCF-7	breast:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs13085453	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56996908	1.00[AMR][1000 genomes]
rs57492353	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57581846	1.00[AMR][1000 genomes]
rs58345395	1.00[AMR][1000 genomes]
rs58880987	1.00[AMR][1000 genomes]
rs58977425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58988785	1.00[AMR][1000 genomes]
rs59256676	1.00[AMR][1000 genomes]
rs59462320	1.00[AMR][1000 genomes]
rs59480491	1.00[AMR][1000 genomes]
rs59581962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59726038	1.00[AMR][1000 genomes]
rs60266120	1.00[AMR][1000 genomes]
rs60389001	1.00[AMR][1000 genomes]
rs60488063	1.00[AMR][1000 genomes]
rs60718786	1.00[AMR][1000 genomes]
rs61133181	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61172524	1.00[AMR][1000 genomes]
rs61517408	1.00[AMR][1000 genomes]
rs72923005	1.00[AMR][1000 genomes]
rs72923016	1.00[AMR][1000 genomes]
rs72923020	1.00[AMR][1000 genomes]
rs72923040	1.00[AMR][1000 genomes]
rs72923043	1.00[AMR][1000 genomes]
rs72923045	1.00[AMR][1000 genomes]
rs72923046	1.00[AMR][1000 genomes]
rs72923053	1.00[AMR][1000 genomes]
rs72923071	1.00[AMR][1000 genomes]
rs72925007	1.00[AMR][1000 genomes]
rs72925011	1.00[AMR][1000 genomes]
rs72925074	1.00[AMR][1000 genomes]
rs72925099	1.00[AMR][1000 genomes]
rs72926923	1.00[AMR][1000 genomes]
rs72926985	1.00[AMR][1000 genomes]
rs72934627	1.00[AMR][1000 genomes]
rs72934633	1.00[AMR][1000 genomes]
rs72934639	1.00[AMR][1000 genomes]
rs72934644	1.00[AMR][1000 genomes]
rs72934650	1.00[AMR][1000 genomes]
rs72934662	1.00[AMR][1000 genomes]
rs72934664	1.00[AMR][1000 genomes]
rs72934665	1.00[AMR][1000 genomes]
rs72934681	1.00[AMR][1000 genomes]
rs72934683	1.00[AMR][1000 genomes]
rs72934691	1.00[AMR][1000 genomes]
rs72936622	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936644	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936652	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936657	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936667	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936668	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936670	0.91[AFR][1000 genomes]
rs72936673	0.91[AFR][1000 genomes]
rs72936691	0.91[AFR][1000 genomes]
rs72936692	0.91[AFR][1000 genomes]
rs72936694	0.83[AFR][1000 genomes]
rs72936700	0.91[AFR][1000 genomes]
rs72938507	0.91[AFR][1000 genomes]
rs72938515	0.91[AFR][1000 genomes]
rs72938525	0.91[AFR][1000 genomes]
rs72938535	1.00[AFR][1000 genomes]
rs72938539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938557	1.00[AFR][1000 genomes]
rs72938584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72940515	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72940521	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72940528	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72940538	1.00[AMR][1000 genomes]
rs72940543	1.00[AMR][1000 genomes]
rs72940552	1.00[AMR][1000 genomes]
rs72940570	1.00[AMR][1000 genomes]
rs72940573	1.00[AMR][1000 genomes]
rs72940576	1.00[AMR][1000 genomes]
rs72940577	1.00[AMR][1000 genomes]
rs72940581	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591065	chr3:98204198-98766326	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv877214	chr3:98445324-98738006	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98681400-98683400	Enhancers	Osteobl	bone
2	chr3:98681400-98683600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:98681400-98684200	Enhancers	NHLF	lung
4	chr3:98681400-98684400	Enhancers	NHDF-Ad	bronchial
5	chr3:98681400-98686000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:98681800-98683800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:98681800-98685800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:98682000-98683200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:98682200-98684200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:98682400-98683200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:98682400-98683200	Enhancers	A549	lung
12	chr3:98682400-98683200	Weak transcription	HSMM	muscle
13	chr3:98682400-98684000	Enhancers	NH-A	brain
14	chr3:98682400-98684200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr3:98682400-98684200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:98682400-98685200	Weak transcription	HUVEC	blood vessel
17	chr3:98682400-98685800	Enhancers	HMEC	breast
18	chr3:98682400-98686000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr3:98682600-98684200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:98682800-98683200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr3:98682800-98683800	Enhancers	Fetal Brain Male	brain
22	chr3:98683000-98685600	Enhancers	NHEK	skin
23	chr3:98683000-98686000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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