Variant report

Variant	rs72936692
Chromosome Location	chr3:98625774-98625775
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:98619287..98623139-chr3:98625512..98627291,3	K562	blood:
2	chr3:98609933..98612061-chr3:98623742..98626335,2	K562	blood:
3	chr3:98619082..98623514-chr3:98623819..98627236,6	K562	blood:

Variant related genes	Relation type
ENSG00000239462	Chromatin interaction
ENSG00000057019	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs58977425	0.91[AFR][1000 genomes]
rs59581962	0.91[AFR][1000 genomes]
rs72936622	0.82[AFR][1000 genomes]
rs72936644	0.82[AFR][1000 genomes]
rs72936652	0.82[AFR][1000 genomes]
rs72936657	0.82[AFR][1000 genomes]
rs72936667	0.82[AFR][1000 genomes]
rs72936668	0.82[AFR][1000 genomes]
rs72936670	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936694	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938535	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938539	0.91[AFR][1000 genomes]
rs72938557	0.91[AFR][1000 genomes]
rs72938573	0.91[AFR][1000 genomes]
rs72938584	0.91[AFR][1000 genomes]
rs72938585	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591065	chr3:98204198-98766326	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv877214	chr3:98445324-98738006	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98623000-98628000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:98623600-98636400	Weak transcription	Fetal Heart	heart
3	chr3:98624800-98626600	Enhancers	NHLF	lung
4	chr3:98625000-98625800	Flanking Active TSS	A549	lung
5	chr3:98625000-98626000	Flanking Active TSS	NH-A	brain
6	chr3:98625000-98626000	Enhancers	NHEK	skin
7	chr3:98625000-98626200	Enhancers	HSMM	muscle
8	chr3:98625000-98626400	Enhancers	Osteobl	bone
9	chr3:98625200-98626400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:98625400-98626000	Enhancers	Ovary	ovary
11	chr3:98625400-98636600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:98625600-98626000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:98625600-98626000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:98625600-98626000	Enhancers	NHDF-Ad	bronchial
15	chr3:98625600-98626200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:98625600-98626400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:98625600-98626400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr3:98625600-98637200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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