Variant report

Variant	rs59003218
Chromosome Location	chr8:8554921-8554922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr8:8554811-8555200	GM12891	blood:	n/a	n/a
2	EP300	chr8:8554876-8555124	GM12878	blood:	n/a	n/a
3	USF2	chr8:8554898-8555105	GM12878	blood:	n/a	n/a
4	EP300	chr8:8554829-8555219	GM12878	blood:	n/a	chr8:8555127-8555141
5	BHLHE40	chr8:8554817-8555130	GM12878	blood:	n/a	n/a
6	CHD2	chr8:8554873-8554960	GM12878	blood:	n/a	n/a
7	MXI1	chr8:8554843-8555043	GM12878	blood:	n/a	n/a
8	MAX	chr8:8554847-8555082	GM12878	blood:	n/a	n/a
9	SPI1	chr8:8554853-8555136	GM12878	blood:	n/a	n/a
10	CUX1	chr8:8554798-8555285	GM12878	blood:	n/a	n/a
11	SPI1	chr8:8554839-8555128	GM12891	blood:	n/a	n/a
12	EP300	chr8:8554863-8555143	GM12878	blood:	n/a	chr8:8555127-8555141
13	SPI1	chr8:8554668-8555275	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:8553226..8556449-chr8:8563078..8566145,3	MCF-7	breast:
2	chr8:8553109..8555242-chr8:8558598..8560731,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176305	TF binding region
CLDN23	TF binding region
ENSG00000176305	Chromatin interaction
ENSG00000253958	Chromatin interaction

Extended variants
information (count: 120 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10095733	0.88[ASN][1000 genomes]
rs10103769	0.90[ASN][1000 genomes]
rs10108819	0.88[ASN][1000 genomes]
rs10113115	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10503394	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1060106	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1060107	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1109619	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11249878	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11249879	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11249880	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11249881	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11249883	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11249884	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11249885	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11249886	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11249887	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11249888	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11249889	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11249890	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11776987	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11777719	0.83[ASN][1000 genomes]
rs11781257	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11783670	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11783735	0.90[ASN][1000 genomes]
rs11786125	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11995449	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12153	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12541477	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12541520	0.90[ASN][1000 genomes]
rs12543768	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12545771	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12546784	0.92[ASN][1000 genomes]
rs12547721	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12548792	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12550057	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12550458	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12679360	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12679831	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12680019	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12680167	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12681298	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12681326	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12681327	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12681925	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12682361	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13248447	0.83[ASN][1000 genomes]
rs13249534	0.82[ASN][1000 genomes]
rs13249700	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13249817	0.92[ASN][1000 genomes]
rs13251887	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13254997	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13255061	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13255789	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13256404	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13256611	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13257302	0.92[ASN][1000 genomes]
rs13258283	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13259955	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13262980	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13263254	0.85[ASN][1000 genomes]
rs13266562	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13266699	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13267036	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13267365	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13267501	0.88[ASN][1000 genomes]
rs13268249	0.87[ASN][1000 genomes]
rs13270006	0.89[ASN][1000 genomes]
rs13270852	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13271698	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13277708	0.88[ASN][1000 genomes]
rs13280101	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13280759	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13281933	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13282500	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13282580	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13282915	0.90[ASN][1000 genomes]
rs1403373	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2001308	0.82[ASN][1000 genomes]
rs2001354	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2280560	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2409021	0.82[ASN][1000 genomes]
rs2409022	0.83[ASN][1000 genomes]
rs2898070	0.81[ASN][1000 genomes]
rs34194904	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34491508	0.88[ASN][1000 genomes]
rs34762800	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35382339	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4840350	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4840351	0.90[ASN][1000 genomes]
rs4840352	0.89[ASN][1000 genomes]
rs4841014	0.87[ASN][1000 genomes]
rs4841015	0.93[ASN][1000 genomes]
rs4841016	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs57506062	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7004438	0.88[ASN][1000 genomes]
rs873063	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs873064	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs883648	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs885000	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9329164	0.82[ASN][1000 genomes]
rs9644772	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9644773	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890331	chr8:8093240-8971100	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1025994	chr8:8108863-8580201	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv1030433	chr8:8130629-8653691	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv539447	chr8:8130629-8653691	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv1033463	chr8:8221922-8674333	Weak transcription Bivalent/Poised TSS Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	nsv539451	chr8:8221922-8674333	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv1019613	chr8:8239352-8636357	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv539452	chr8:8239352-8636357	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
9	nsv1019606	chr8:8353661-8736992	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
10	nsv539456	chr8:8353661-8736992	Strong transcription Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
11	nsv995047	chr8:8353662-8857913	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
12	nsv1016933	chr8:8432279-8624770	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
13	nsv1022511	chr8:8493992-8737132	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
14	nsv539457	chr8:8493992-8737132	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
15	nsv1033340	chr8:8522963-8565946	Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
16	nsv539458	chr8:8522963-8565946	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
17	nsv1028237	chr8:8532992-8588470	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs59003218	CLDN23	cis	Skin Sun Exposed Lower leg	GTEx
rs59003218	AC087269.1	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:8547000-8555600	Weak transcription	Gastric	stomach
2	chr8:8549800-8558400	Weak transcription	Pancreas	Pancrea
3	chr8:8550400-8555400	Weak transcription	Fetal Intestine Small	intestine
4	chr8:8553800-8556800	Enhancers	Stomach Mucosa	stomach
5	chr8:8554400-8555600	Enhancers	Liver	Liver
6	chr8:8554400-8557400	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr8:8554600-8555200	Weak transcription	GM12878-XiMat	blood
8	chr8:8554800-8555600	Enhancers	Primary B cells from peripheral blood	blood

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