Variant report

Variant	rs59018642
Chromosome Location	chr3:150733471-150733472
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16863040	1.00[EUR][1000 genomes]
rs16863042	1.00[EUR][1000 genomes]
rs16863066	1.00[EUR][1000 genomes]
rs16863089	1.00[EUR][1000 genomes]
rs58015959	1.00[EUR][1000 genomes]
rs60663224	1.00[EUR][1000 genomes]
rs73005222	1.00[EUR][1000 genomes]
rs73009124	1.00[EUR][1000 genomes]
rs73871626	1.00[EUR][1000 genomes]
rs7614671	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915879	chr3:150607390-150860207	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv829756	chr3:150692636-150889738	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150728800-150734200	Enhancers	Fetal Intestine Small	intestine
2	chr3:150729600-150733800	Weak transcription	NH-A	brain
3	chr3:150730800-150734600	Enhancers	Fetal Intestine Large	intestine
4	chr3:150732400-150734200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:150733000-150733800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:150733000-150734400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:150733000-150734600	Enhancers	Rectal Smooth Muscle	rectum
8	chr3:150733200-150733800	Enhancers	Osteobl	bone
9	chr3:150733200-150734200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:150733200-150734400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:150733200-150734400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr3:150733200-150734600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:150733200-150734600	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr3:150733200-150734600	Enhancers	NHDF-Ad	bronchial
15	chr3:150733400-150734200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:150733400-150734200	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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