Variant report

Variant	rs7614671
Chromosome Location	chr3:150636057-150636058
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1373420	1.00[CHB][hapmap]
rs16863040	1.00[EUR][1000 genomes]
rs16863042	1.00[EUR][1000 genomes]
rs16863066	1.00[EUR][1000 genomes]
rs16863089	1.00[EUR][1000 genomes]
rs58015959	1.00[EUR][1000 genomes]
rs59018642	1.00[EUR][1000 genomes]
rs60663224	1.00[EUR][1000 genomes]
rs73005222	1.00[EUR][1000 genomes]
rs73009124	1.00[EUR][1000 genomes]
rs73871626	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877646	chr3:150582992-150641304	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a
2	nsv915879	chr3:150607390-150860207	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv877647	chr3:150609694-150641304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150632200-150645200	Weak transcription	Right Atrium	heart
2	chr3:150635000-150636600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr3:150635600-150636200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr3:150635600-150636200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr3:150635600-150636200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr3:150635800-150636200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr3:150635800-150636400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr3:150635800-150636600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr3:150636000-150636200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr3:150636000-150643600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links