Variant report

Variant	rs73009124
Chromosome Location	chr3:150642085-150642086
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16863040	1.00[EUR][1000 genomes]
rs16863042	1.00[EUR][1000 genomes]
rs16863066	1.00[EUR][1000 genomes]
rs16863089	1.00[EUR][1000 genomes]
rs58015959	1.00[EUR][1000 genomes]
rs59018642	1.00[EUR][1000 genomes]
rs60663224	1.00[EUR][1000 genomes]
rs73005222	1.00[EUR][1000 genomes]
rs73871626	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7614671	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915879	chr3:150607390-150860207	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150632200-150645200	Weak transcription	Right Atrium	heart
2	chr3:150636000-150643600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:150636200-150643200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:150636200-150643400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr3:150639400-150643000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:150639600-150643200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:150640000-150643400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr3:150640200-150643200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:150640600-150643200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr3:150640600-150643200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr3:150640600-150643200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr3:150641600-150644000	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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